STAR-Fusion release v1.1.0

[Brian Haas]

Greetings all,

I've just packaged up a new release for STAR-Fusion:

https://github.com/STAR-Fusion/STAR-Fusion/releases

I'll work on updating the documentation by late tomorrow.


Release notes are as follows:

Note: must download the 'FULL' version below, as that contains all required submodules. If you do not do this, you will be missing key components. GitHub auto-generates the other non-FULL releases.

Note: v1.1.0 requires a new CTAT_genome_lib: 

 https://data.broadinstitute.org/Trinity/CTAT_RESOURCE_LIB/

annotating fusions based on known cancer fusions (--annotate)

exploring the effects on fused coding regions, reconstructing candidate fusion transcripts and fusion proteins (--examine_coding_effect)

extracting the fastq reads that provide the evidence for fusion transcripts (use --extract_fusion_reads)

perform 'in silico validation' of fusion transcripts using FusionInspector ( --FusionInspector <inspect|validate> )

de novo reconstruct fusion transcripts using Trinity (--denovo_reconstruct)


--
--
Brian J. Haas
The Broad Institute
http://broadinstitute.org/~bhaas

 

[Brian Haas]

An updated Docker image is now available for STAR-Fusion v1.1.0

   https://hub.docker.com/r/trinityctat/ctatfusion/tags/

[Brian Haas]

Documentation for STAR-Fusion including all the new modules for fusion annotation, coding effect analysis, de novo reconstruction, etc.

   https://github.com/STAR-Fusion/STAR-Fusion/wiki