Compilation ERROR, function(s)/method(s) not created!

[Lu Zhang]

Hi Stan,

   I am trying to install Rstan on my old PC. But I got the following Compilation Error after running a stan code:

888: }
889:
890:
Error in compileCode(f, code, language = language, verbose = verbose) :
  Compilation ERROR, function(s)/method(s) not created! c:/Rtools/mingw_64/bin/g++: not found
make: *** [fileb8437281799.o] Error 127

     I searched the error message online, and found the old issue: https://github.com/stan-dev/rstan/issues/307. Then I installed Rtools3.3.* followed the old issue, but it didn't work. The setting in R is listed below:

> Sys.getenv("PATH")
[1] "D:\\Program Files\\Rtools\\bin;D:\\Program Files\\Rtools\\mingw_32\\bin;C:\\Program Files (x86)\\Intel\\iCLS Client\\;C:\\Program Files\\Intel\\iCLS Client\\;C:\\WINDOWS\\system32;C:\\WINDOWS;C:\\WINDOWS\\System32\\Wbem;C:\\WINDOWS\\System32\\WindowsPowerShell\\v1.0\\;C:\\Program Files\\Intel\\WiFi\\bin\\;C:\\Program Files\\Common Files\\Intel\\WirelessCommon\\;c:\\Program Files (x86)\\Lenovo\\Lenovo Home\\;C:\\Program Files\\Intel\\Intel(R) Management Engine Components\\DAL;C:\\Program Files\\Intel\\Intel(R) Management Engine Components\\IPT;C:\\Program Files (x86)\\Intel\\Intel(R) Management Engine Components\\DAL;C:\\Program Files (x86)\\Intel\\Intel(R) Management Engine Components\\IPT;C:\\Program Files (x86)\\Intel\\OpenCL SDK\\2.0\\bin\\x86;C:\\Program Files (x86)\\Intel\\OpenCL SDK\\2.0\\bin\\x64;C:\\Program Files (x86)\\Lenovo\\Access Connections\\;C:\\Program Files\\Common Files\\Lenovo;C:\\Program Files\\Lenovo Fingerprint Reader\\;C:\\Program Files\\Lenovo Fingerprint Reader\\x86\\;C:\\Program Files\\Intel\\WiFi\\bin\\;C:\\Program Files\\Common Files\\Intel\\WirelessCommon\\;c:\\Program Files (x86)\\Lenovo\\Lenovo Home\\DCMainWin.exe"
> system('g++ -v')
Using built-in specs.
COLLECT_GCC=D:\PROGRA~1\Rtools\mingw_32\bin\G__~1.EXE
COLLECT_LTO_WRAPPER=D:/PROGRA~1/Rtools/mingw_32/bin/../libexec/gcc/i686-w64-mingw32/4.9.3/lto-wrapper.exe
Target: i686-w64-mingw32
Configured with: ../../../src/gcc-4.9.3/configure --host=i686-w64-mingw32 --build=i686-w64-mingw32 --target=i686-w64-mingw32 --prefix=/mingw32 --with-sysroot=/home/Jeroen/mingw-gcc-4.9.3/i686-493-posix-dwarf-rt_v3-s/mingw32 --with-gxx-include-dir=/mingw32/i686-w64-mingw32/include/c++ --enable-static --disable-shared --disable-multilib --enable-languages=c,c++,fortran,lto --enable-libstdcxx-time=yes --enable-threads=posix --enable-libgomp --enable-libatomic --enable-lto --enable-graphite --enable-checking=release --enable-fully-dynamic-string --enable-version-specific-runtime-libs --disable-sjlj-exceptions --with-dwarf2 --disable-isl-version-check --disable-cloog-version-check --disable-libstdcxx-pch --disable-libstdcxx-debug --enable-bootstrap --disable-rpath --disable-win32-registry --disable-nls --disable-werror --disable-symvers --with-gnu-as --with-gnu-ld --with-arch=i686 --with-tune=generic --with-libiconv --with-system-zlib --with-gmp=/home/Jeroen/mingw-gcc-4.9.3/prerequisites/i686-w64-mingw32-static --with-mpfr=/home/Jeroen/mingw-gcc-4.9.3/prerequisites/i686-w64-mingw32-static --with-mpc=/home/Jeroen/mingw-gcc-4.9.3/prerequisites/i686-w64-mingw32-static --with-isl=/home/Jeroen/mingw-gcc-4.9.3/prerequisites/i686-w64-mingw32-static --with-cloog=/home/Jeroen/mingw-gcc-4.9.3/prerequisites/i686-w64-mingw32-static --enable-cloog-backend=isl --with-pkgversion='i686-posix-dwarf, Built by MinGW-W64 project' --with-bugurl=http://sourceforge.net/projects/mingw-w64 CFLAGS='-O2 -pipe -I/home/Jeroen/mingw-gcc-4.9.3/i686-493-posix-dwarf-rt_v3-s/mingw32/opt/include -I/home/Jeroen/mingw-gcc-4.9.3/prerequisites/i686-zlib-static/include -I/home/Jeroen/mingw-gcc-4.9.3/prerequisites/i686-w64-mingw32-static/include' CXXFLAGS='-O2 -pipe -I/home/Jeroen/mingw-gcc-4.9.3/i686-493-posix-dwarf-rt_v3-s/mingw32/opt/include -I/home/Jeroen/mingw-gcc-4.9.3/prerequisites/i686-zlib-static/include -I/home/Jeroen/mingw-gcc-4.9.3/prerequisites/i686-w64-mingw32-static/include' CPPFLAGS= LDFLAGS='-pipe -L/home/Jeroen/mingw-gcc-4.9.3/i686-493-posix-dwarf-rt_v3-s/mingw32/opt/lib -L/home/Jeroen/mingw-gcc-4.9.3/prerequisites/i686-zlib-static/lib -L/home/Jeroen/mingw-gcc-4.9.3/prerequisites/i686-w64-mingw32-static/lib -Wl,--large-address-aware'
Thread model: posix
gcc version 4.9.3 (i686-posix-dwarf, Built by MinGW-W64 project)

My R version is 3.4.0. My Rstan version is 2.15.1. The operating system is Windows 10.

I also tried installing rstan from github, and I did tests in R3.3.2 and R3.3.3, but none of them solve the problem.  Would anyone give me some suggestions?

Thank you very much!

Sincerely,

Lu

 

[Ben Goodrich]

On Wednesday, April 26, 2017 at 2:02:29 AM UTC-4, Lu Zhang wrote:

Error in compileCode(f, code, language = language, verbose = verbose) :

  Compilation ERROR, function(s)/method(s) not created! c:/Rtools/mingw_64/bin/g++: not found
make: *** [fileb8437281799.o] Error 127

You appear to be running 32bit R on a 64bit system. Try executing this once:

cat('Sys.setenv(BINPREF = "C:/Rtools/mingw_32/bin/")',
    file = file.path(Sys.getenv("HOME"), ".Rprofile"), 
    sep = "\n", append = TRUE)

Ben

[Lu Zhang]

I uninstalled the R and reinstall only 64 bit version of R and Rtools, and installed Rstan from github. and tried your command. Still not work.

[Ben Goodrich]

On Wednesday, April 26, 2017 at 12:34:02 PM UTC-4, Lu Zhang wrote:

I uninstalled the R and reinstall only 64 bit version of R and Rtools, and installed Rstan from github. and tried your command. Still not work.

That is hopefully because what I posted was for the case of 32 bit R. If you are using 64 bit R, then it would be

cat('Sys.setenv(BINPREF = "C:/Rtools/mingw_64/bin/")',
    

file = file.path(Sys.getenv("HOME"), ".Rprofile"), 
    sep = "\n", append = TRUE)

or whatever directory g++ resides in.

[Lu Zhang]

Cool, I will try this evening. 

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[Lu Zhang]

Sorry, I still got the same error:

890:

Error in compileCode(f, code, language = language, verbose = verbose) :

  Compilation ERROR, function(s)/method(s) not created! C:/Rtools/mingw_64/bin/g++: not found
make: *** [file261042c44b7c.o] Error 127
Warning message:
running command 'make -f "D:/PROGRA~1/R/R-34~1.0/etc/x64/Makeconf" -f "D:/PROGRA~1/R/R-34~1.0/share/make/winshlib.mk" SHLIB_LDFLAGS='$(SHLIB_CXXLDFLAGS)' SHLIB_LD='$(SHLIB_CXXLD)' SHLIB="file261042c44b7c.dll" WIN=64 TCLBIN=64 OBJECTS="file261042c44b7c.o"' had status 2
In addition: Warning message:
running command 'D:/PROGRA~1/R/R-34~1.0/bin/x64/R CMD SHLIB file261042c44b7c.cpp 2> file261042c44b7c.cpp.err.txt' had status 1

[Ben Goodrich]

Whatever

system('g++ -v')

says, you have to get the BINPREF environment variable pointing to that directory.