Rstan source code errors or compiler configuration error
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Christian Meister
Sep 4, 2015, 7:11:29 AM9/4/15
to Stan users mailing list
Hi,
my gcc version on the external machine:
and the error code:
I just updated to Rstan 2.7.0-1 on an external machine. Thereupon I wanted to compile my model again - the same model which worked under previous Rstan versions at the same machine. But now I get some errors.
I already reinstalled Rstan, deleted the /.R/Makevars and created a new one, always following the "rstan getting started"-tutorial and tried this several times. Maybe it's trivial, but I don't see the solution and didn't found a similar error here in the group. The model is attached. Hopefully you could help me. Many thanks in advance!
Here's some info from the external machine:
> sessionInfo()R version 3.1.2 (2014-10-31)Platform: x86_64-unknown-linux-gnu (64-bit)
locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=de_DE.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=de_DE.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=de_DE.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=de_DE.UTF-8 LC_IDENTIFICATION=C
attached base packages:[1] stats graphics grDevices utils datasets methods base
other attached packages:[1] rstan_2.7.0-1 inline_0.3.14 Rcpp_0.12.0
loaded via a namespace (and not attached):[1] stats4_3.1.2
gcc --versiongcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11)Copyright (C) 2010 Free Software Foundation, Inc.This is free software; see the source for copying conditions. There is NOwarranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
and the error code:
> source("04_compileModels.R")Loading required package: RcppLoading required package: inline
Attaching package: ‘inline’
The following object is masked from ‘package:Rcpp’:
registerPlugin
rstan (Version 2.7.0-1, packaged: 2015-07-17 18:12:01 UTC, GitRev: 05c3d0058b6a)For execution on a local, multicore CPU with excess RAM we recommend callingrstan_options(auto_write = TRUE)options(mc.cores = parallel::detectCores())
TRANSLATING MODEL '03_growthstem' FROM Stan CODE TO C++ CODE NOW.successful in parsing the Stan model '03_growthstem'.COMPILING THE C++ CODE FOR MODEL '03_growthstem' NOW.OS: x86_64, linux-gnu; rstan: 2.7.0.1; Rcpp: 0.12.0; inline: 0.3.14 >> setting environment variables: PKG_LIBS = PKG_CPPFLAGS = -isystem"/gpfs0/global/local/R/3.1.2-3/lib64/R/library/Rcpp/include/" -isystem"/gpfs0/global/local/R/3.1.2-3/lib64/R/library/RcppEigen/include/" -isystem"/gpfs0/global/local/R/3.1.2-3/lib64/R/library/RcppEigen/include/unsupported" -isystem"/gpfs0/home/nadja/R/x86_64-unknown-linux-gnu-library/3.1/rstan/include/boost_not_in_BH" -isystem"/gpfs0/global/local/R/3.1.2-3/lib64/R/library/BH/include" -isystem"/gpfs0/home/nadja/R/x86_64-unknown-linux-gnu-library/3.1/StanHeaders/include/src/" -isystem"/gpfs0/home/nadja/R/x86_64-unknown-linux-gnu-library/3.1/StanHeaders/include/" -I"/gpfs0/home/nadja/R/x86_64-unknown-linux-gnu-library/3.1/rstan/include" -O3 -Wno-unused-function -Wno-uninitialized -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG >> Program source :
1 : 2 : // includes from the plugin 3 : 4 : 5 : // user includes 6 : #define STAN__SERVICES__COMMAND_HPP// Code generated by Stan version 2.7 7 : 8 : #include <stan/model/model_header.hpp> 9 : 10 : namespace modeld2b770d551c_03_growthstem_namespace { 11 : 12 : using std::istream; 13 : using std::string; 14 : using std::stringstream; 15 : using std::vector; 16 : using stan::io::dump; 17 : using stan::math::lgamma; 18 : using stan::model::prob_grad; 19 : using namespace stan::math; 20 : 21 : typedef Eigen::Matrix<double,Eigen::Dynamic,1> vector_d; 22 : typedef Eigen::Matrix<double,1,Eigen::Dynamic> row_vector_d; 23 : typedef Eigen::Matrix<double,Eigen::Dynamic,Eigen::Dynamic> matrix_d; 24 : 25 : static int current_statement_begin__; 26 : class modeld2b770d551c_03_growthstem : public prob_grad { 27 : private: 28 : int N_ind; 29 : int N_sp; 30 : vector<int> species; 31 : double f; 32 : vector_d shade; 33 : vector_d logdbh; 34 : vector_d sigma_1; 35 : vector_d sigma_2; 36 : vector_d datediff; 37 : vector_d abundance; 38 : vector<double> obs; 39 : public: 40 : modeld2b770d551c_03_growthstem(stan::io::var_context& context__, 41 : std::ostream* pstream__ = 0) 42 : : prob_grad(0) { 43 : current_statement_begin__ = -1; 44 : 45 : static const char* function__ = "modeld2b770d551c_03_growthstem_namespace::modeld2b770d551c_03_growthstem"; 46 : (void) function__; // dummy call to supress warning 47 : size_t pos__; 48 : (void) pos__; // dummy call to supress warning 49 : std::vector<int> vals_i__; 50 : std::vector<double> vals_r__; 51 : context__.validate_dims("data initialization", "N_ind", "int", context__.to_vec()); 52 : N_ind = int(0); 53 : vals_i__ = context__.vals_i("N_ind"); 54 : pos__ = 0; 55 : N_ind = vals_i__[pos__++]; 56 : context__.validate_dims("data initialization", "N_sp", "int", context__.to_vec()); 57 : N_sp = int(0); 58 : vals_i__ = context__.vals_i("N_sp"); 59 : pos__ = 0; 60 : N_sp = vals_i__[pos__++]; 61 : context__.validate_dims("data initialization", "species", "int", context__.to_vec(N_ind)); 62 : validate_non_negative_index("species", "N_ind", N_ind); 63 : species = std::vector<int>(N_ind,int(0)); 64 : vals_i__ = context__.vals_i("species"); 65 : pos__ = 0; 66 : size_t species_limit_#include <rstan/rstaninc.hpp> 67 : /** 68 : * Define Rcpp Module to expose stan_fit's functions to R. 69 : */ 70 : RCPP_MODULE(stan_fit4modeld2b770d551c_03_growthstem_mod){ 71 : Rcpp::class_<rstan::stan_fit<modeld2b770d551c_03_growthstem_namespace::modeld2b770d551c_03_growthstem, 72 : boost::random::ecuyer1988> >("stan_fit4modeld2b770d551c_03_growthstem") 73 : // .constructor<Rcpp::List>() 74 : .constructor<SEXP, SEXP>() 75 : // .constructor<SEXP, SEXP>() 76 : .method("call_sampler", 77 : &rstan::stan_fit<modeld2b770d551c_03_growthstem_namespace::modeld2b770d551c_03_growthstem, boost::random::ecuyer1988>::call_sampler) 78 : .method("param_names", 79 : &rstan::stan_fit<modeld2b770d551c_03_growthstem_namespace::modeld2b770d551c_03_growthstem, boost::random::ecuyer1988>::param_names) 80 : .method("param_names_oi", 81 : &rstan::stan_fit<modeld2b770d551c_03_growthstem_namespace::modeld2b770d551c_03_growthstem, boost::random::ecuyer1988>::param_names_oi) 82 : .method("param_fnames_oi", 83 : &rstan::stan_fit<modeld2b770d551c_03_growthstem_namespace::modeld2b770d551c_03_growthstem, boost::random::ecuyer1988>::param_fnames_oi) 84 : .method("param_dims", 85 : &rstan::stan_fit<modeld2b770d551c_03_growthstem_namespace::modeld2b770d551c_03_growthstem, boost::random::ecuyer1988>::param_dims) 86 : .method("param_dims_oi", 87 : &rstan::stan_fit<modeld2b770d551c_03_growthstem_namespace::modeld2b770d551c_03_growthstem, boost::random::ecuyer1988>::param_dims_oi) 88 : .method("update_param_oi", 89 : &rstan::stan_fit<modeld2b770d551c_03_growthstem_namespace::modeld2b770d551c_03_growthstem, boost::random::ecuyer1988>::update_param_oi) 90 : .method("param_oi_tidx", 91 : &rstan::stan_fit<modeld2b770d551c_03_growthstem_namespace::modeld2b770d551c_03_growthstem, boost::random::ecuyer1988>::param_oi_tidx) 92 : .method("grad_log_prob", 93 : &rstan::stan_fit<modeld2b770d551c_03_growthstem_namespace::modeld2b770d551c_03_growthstem, boost::random::ecuyer1988>::grad_log_prob) 94 : .method("log_prob", 95 : &rstan::stan_fit<modeld2b770d551c_03_growthstem_namespace::modeld2b770d551c_03_growthstem, boost::random::ecuyer1988>::log_prob) 96 : .method("unconstrain_pars", 97 : &rstan::stan_fit<modeld2b770d551c_03_growthstem_namespace::modeld2b770d551c_03_growthstem, boost::random::ecuyer1988>::unconstrain_pars) 98 : .method("constrain_pars", 99 : &rstan::stan_fit<modeld2b770d551c_03_growthstem_namespace::modeld2b770d551c_03_growthstem, boost::random::ecuyer1988>::constrain_pars) 100 : .method("num_pars_unconstrained", 101 : &rstan::stan_fit<modeld2b770d551c_03_growthstem_namespace::modeld2b770d551c_03_growthstem, boost::random::ecuyer1988>::num_pars_unconstrained) 102 : .method("unconstrained_param_names", 103 : &rstan::stan_fit<modeld2b770d551c_03_growthstem_namespace::modeld2b770d551c_03_growthstem, boost::random::ecuyer1988>::unconstrained_param_names) 104 : .method("constrained_param_names", 105 : &rstan::stan_fit<modeld2b770d551c_03_growthstem_namespace::modeld2b770d551c_03_growthstem, boost::random::ecuyer1988>::constrained_param_names) 106 : ; 107 : } 108 : 109 : // declarations 110 : extern "C" { 111 : SEXP filed2b93ba739( ) ; 112 : } 113 : 114 : // definition 115 : 116 : SEXP filed2b93ba739( ){ 117 : return Rcpp::wrap("03_growthstem"); 118 : } 119 : 120 : Compilation argument: /usr/local/R/3.1.2-3/lib64/R/bin/R CMD SHLIB filed2b93ba739.cpp 2> filed2b93ba739.cpp.err.txt /usr/local/gcc/5.2.0-1/bin/g++ -I/usr/local/R/3.1.2-3/lib64/R/include -DNDEBUG -isystem"/gpfs0/global/local/R/3.1.2-3/lib64/R/library/Rcpp/include/" -isystem"/gpfs0/global/local/R/3.1.2-3/lib64/R/library/RcppEigen/include/" -isystem"/gpfs0/global/local/R/3.1.2-3/lib64/R/library/RcppEigen/include/unsupported" -isystem"/gpfs0/home/nadja/R/x86_64-unknown-linux-gnu-library/3.1/rstan/include/boost_not_in_BH" -isystem"/gpfs0/global/local/R/3.1.2-3/lib64/R/library/BH/include" -isystem"/gpfs0/home/nadja/R/x86_64-unknown-linux-gnu-library/3.1/StanHeaders/include/src/" -isystem"/gpfs0/home/nadja/R/x86_64-unknown-linux-gnu-library/3.1/StanHeaders/include/" -I"/gpfs0/home/nadja/R/x86_64-unknown-linux-gnu-library/3.1/rstan/include" -O3 -Wno-unused-function -Wno-uninitialized -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I/usr/local/libxrender/0.9.8-2/include -I/usr/local/libxmu/1.1.2-1/include -I/usr/local/libxinerama/1.1.3-1/include -I/usr/local/libxext/1.3.1-1/include -I/usr/local/libxt/1.1.4-1/include -I/usr/local/libx11/1.5.0-1/include -I/usr/local/xextproto/7.2.1-1/include -I/usr/local/inputproto/2.2-1/include -I/usr/local/libxcb/1.9-1/include -I/usr/local/libxdmcp/1.1.1-1/include -I/usr/local/xproto/7.0.23-1/include -I/usr/local/libxau/1.0.7-1/include -I/usr/local/readline/6.3-2/include -I/usr/local/ncurses/5.9-1/include/ncursesw -I/usr/local/ncurses/5.9-1/include -I/usr/local/cairo/1.14.2-1/include -I/usr/local/glib/2.45.4-1/include -I/usr/local/libffi/3.2.1-1/include -I/usr/local/fontconfig/2.11.94-1/include -I/usr/local/expat/2.1.0-4/include -I/usr/local/pixman/0.32.6-1/include -I/usr/local/libxml2/2.9.2-1/include/libxml2 -I/usr/local/libxml2/2.9.2-1/include -I/usr/local/freetype/2.5.5-1/include -I/usr/local/libpng/1.6.16-1/include -I/usr/local/bzip2/1.0.6-3/include -I/usr/local/zlib/1.2.8-4/include -fpic -O3 -c filed2b93ba739.cpp -o filed2b93ba739.ofiled2b93ba739.cpp:66:30: error: stray ‘#’ in program size_t species_limit_#include <rstan/rstaninc.hpp> ^filed2b93ba739.cpp:118:1: error: expected ‘}’ at end of input } ^filed2b93ba739.cpp: In constructor ‘modeld2b770d551c_03_growthstem_namespace::modeld2b770d551c_03_growthstem::modeld2b770d551c_03_growthstem(stan::io::var_context&, std::ostream*)’:filed2b93ba739.cpp:66:31: error: expected initializer before ‘include’ size_t species_limit_#include <rstan/rstaninc.hpp> ^filed2b93ba739.cpp:110:8: error: expected unqualified-id before string constant extern "C" { ^filed2b93ba739.cpp:116:1: error: ‘SEXP’ was not declared in this scope SEXP filed2b93ba739( ){ ^filed2b93ba739.cpp:118:1: error: expected ‘}’ at end of input } ^filed2b93ba739.cpp: At global scope:filed2b93ba739.cpp:118:1: error: expected unqualified-id at end of inputfiled2b93ba739.cpp:118:1: error: expected ‘}’ at end of inputmake: *** [filed2b93ba739.o] Error 1
ERROR(s) during compilation: source code errors or compiler configuration errors!
Program source: 1: 2: // includes from the plugin 3: 4: 5: // user includes 6: #define STAN__SERVICES__COMMAND_HPP// Code generated by Stan version 2.7 7: 8: #include <stan/model/model_header.hpp> 9: 10: namespace modeld2b770d551c_03_growthstem_namespace { 11: 12: using std::istream; 13: using std::string; 14: using std::stringstream; 15: using std::vector; 16: using stan::io::dump; 17: using stan::math::lgamma; 18: using stan::model::prob_grad; 19: using namespace stan::math; 20: 21: typedef Eigen::Matrix<double,Eigen::Dynamic,1> vector_d; 22: typedef Eigen::Matrix<double,1,Eigen::Dynamic> row_vector_d; 23: typedef Eigen::Matrix<double,Eigen::Dynamic,Eigen::Dynamic> matrix_d; 24: 25: static int current_statement_begin__; 26: class modeld2b770d551c_03_growthstem : public prob_grad { 27: private: 28: int N_ind; 29: int N_sp; 30: vector<int> species; 31: double f; 32: vector_d shade; 33: vector_d logdbh; 34: vector_d sigma_1; 35: vector_d sigma_2; 36: vector_d datediff; 37: vector_d abundance; 38: vector<double> obs; 39: public: 40: modeld2b770d551c_03_growthstem(stan::io::var_context& context__, 41: std::ostream* pstream__ = 0) 42: : prob_grad(0) { 43: current_statement_begin__ = -1; 44: 45: static const char* function__ = "modeld2b770d551c_03_growthstem_namespace::modeld2b770d551c_03_growthstem"; 46: (void) function__; // dummy call to supress warning 47: size_t pos__; 48: (void) pos__; // dummy call to supress warning 49: std::vector<int> vals_i__; 50: std::vector<double> vals_r__; 51: context__.validate_dims("data initialization", "N_ind", "int", context__.to_vec()); 52: N_ind = int(0); 53: vals_i__ = context__.vals_i("N_ind"); 54: pos__ = 0; 55: N_ind = vals_i__[pos__++]; 56: context__.validate_dims("data initialization", "N_sp", "int", context__.to_vec()); 57: N_sp = int(0); 58: vals_i__ = context__.vals_i("N_sp"); 59: pos__ = 0; 60: N_sp = vals_i__[pos__++]; 61: context__.validate_dims("data initialization", "species", "int", context__.to_vec(N_ind)); 62: validate_non_negative_index("species", "N_ind", N_ind); 63: species = std::vector<int>(N_ind,int(0)); 64: vals_i__ = context__.vals_i("species"); 65: pos__ = 0; 66: size_t species_limit_#include <rstan/rstaninc.hpp> 67: /** 68: * Define Rcpp Module to expose stan_fit's functions to R. 69: */ 70: RCPP_MODULE(stan_fit4modeld2b770d551c_03_growthstem_mod){ 71: Rcpp::class_<rstan::stan_fit<modeld2b770d551c_03_growthstem_namespace::modeld2b770d551c_03_growthstem, 72: boost::random::ecuyer1988> >("stan_fit4modeld2b770d551c_03_growthstem") 73: // .constructor<Rcpp::List>() 74: .constructor<SEXP, SEXP>() 75: // .constructor<SEXP, SEXP>() 76: .method("call_sampler", 77: &rstan::stan_fit<modeld2b770d551c_03_growthstem_namespace::modeld2b770d551c_03_growthstem, boost::random::ecuyer1988>::call_sampler) 78: .method("param_names", 79: &rstan::stan_fit<modeld2b770d551c_03_growthstem_namespace::modeld2b770d551c_03_growthstem, boost::random::ecuyer1988>::param_names) 80: .method("param_names_oi", 81: &rstan::stan_fit<modeld2b770d551c_03_growthstem_namespace::modeld2b770d551c_03_growthstem, boost::random::ecuyer1988>::param_names_oi) 82: .method("param_fnames_oi", 83: &rstan::stan_fit<modeld2b770d551c_03_growthstem_namespace::modeld2b770d551c_03_growthstem, boost::random::ecuyer1988>::param_fnames_oi) 84: .method("param_dims", 85: &rstan::stan_fit<modeld2b770d551c_03_growthstem_namespace::modeld2b770d551c_03_growthstem, boost::random::ecuyer1988>::param_dims) 86: .method("param_dims_oi", 87: &rstan::stan_fit<modeld2b770d551c_03_growthstem_namespace::modeld2b770d551c_03_growthstem, boost::random::ecuyer1988>::param_dims_oi) 88: .method("update_param_oi", 89: &rstan::stan_fit<modeld2b770d551c_03_growthstem_namespace::modeld2b770d551c_03_growthstem, boost::random::ecuyer1988>::update_param_oi) 90: .method("param_oi_tidx", 91: &rstan::stan_fit<modeld2b770d551c_03_growthstem_namespace::modeld2b770d551c_03_growthstem, boost::random::ecuyer1988>::param_oi_tidx) 92: .method("grad_log_prob", 93: &rstan::stan_fit<modeld2b770d551c_03_growthstem_namespace::modeld2b770d551c_03_growthstem, boost::random::ecuyer1988>::grad_log_prob) 94: .method("log_prob", 95: &rstan::stan_fit<modeld2b770d551c_03_growthstem_namespace::modeld2b770d551c_03_growthstem, boost::random::ecuyer1988>::log_prob) 96: .method("unconstrain_pars", 97: &rstan::stan_fit<modeld2b770d551c_03_growthstem_namespace::modeld2b770d551c_03_growthstem, boost::random::ecuyer1988>::unconstrain_pars) 98: .method("constrain_pars", 99: &rstan::stan_fit<modeld2b770d551c_03_growthstem_namespace::modeld2b770d551c_03_growthstem, boost::random::ecuyer1988>::constrain_pars)100: .method("num_pars_unconstrained",101: &rstan::stan_fit<modeld2b770d551c_03_growthstem_namespace::modeld2b770d551c_03_growthstem, boost::random::ecuyer1988>::num_pars_unconstrained)102: .method("unconstrained_param_names",103: &rstan::stan_fit<modeld2b770d551c_03_growthstem_namespace::modeld2b770d551c_03_growthstem, boost::random::ecuyer1988>::unconstrained_param_names)104: .method("constrained_param_names",105: &rstan::stan_fit<modeld2b770d551c_03_growthstem_namespace::modeld2b770d551c_03_growthstem, boost::random::ecuyer1988>::constrained_param_names)106: ;107: }108: 109: // declarations110: extern "C" {111: SEXP filed2b93ba739( ) ;112: }113: 114: // definition115: 116: SEXP filed2b93ba739( ){117: return Rcpp::wrap("03_growthstem");118: }119: 120: Error in compileCode(f, code, language = language, verbose = verbose) : Compilation ERROR, function(s)/method(s) not created! filed2b93ba739.cpp:66:30: error: stray ‘#’ in program size_t species_limit_#include <rstan/rstaninc.hpp> ^filed2b93ba739.cpp:118:1: error: expected ‘}’ at end of input } ^filed2b93ba739.cpp: In constructor ‘modeld2b770d551c_03_growthstem_namespace::modeld2b770d551c_03_growthstem::modeld2b770d551c_03_growthstem(stan::io::var_context&, std::ostream*)’:filed2b93ba739.cpp:66:31: error: expected initializer before ‘include’ size_t species_limit_#include <rstan/rstaninc.hpp> ^filed2b93ba739.cpp:110:8: error: expected unqualified-id before string constant extern "C" { ^filed2b93ba739.cpp:116:1: error: ‘SEXP’ was not declared in this scope SEXP filed2b93ba739( ){ ^filed2b93ba739.cpp:118:1: error: expected ‘}’ at end of input } ^filed2b93ba739.cpp: At global scope:filed2b93ba739.cpp:118:1: error: expected uIn addition: Warning message:In set_cppo("fast") : 'set_cppo' is defunct; manually edit your Makevars file if necessary
Ben Goodrich
Sep 4, 2015, 9:14:44 AM9/4/15
to Stan users mailing list
On Friday, September 4, 2015 at 7:11:29 AM UTC-4, Christian Meister wrote:
This is very odd
This is very odd
That
#include <rstan/rstaninc.hpp>
/**
* Define Rcpp Module to expose stan_fit's functions to R.
*/
This isn't happening for me, and I've never seen it happen to anyone else.
Does
example(cxxfunction, package = "inline", run.dontrun = TRUE)
Ben
Christian Meister
Sep 4, 2015, 9:41:18 AM9/4/15
to stan-...@googlegroups.com
It works:
> fxAn object of class "CFunc"function (x, y) .Primitive(".Call")(<pointer: 0x2ab086f1ea70>, x, y)<environment: 0x5278c40>Slot "code":[1] "\n// includes from the plugin\n#include <RcppArmadillo.h>\n#include <Rcpp.h>\n\n\n#ifndef BEGIN_RCPP\n#define BEGIN_RCPP\n#endif\n\n#ifndef END_RCPP\n#define END_RCPP\n#endif\n\nusing namespace Rcpp;\n\n\n// user includes\n\n\n// declarations\nextern \"C\" {\nSEXP file76c933e419c1( SEXP x, SEXP y) ;\n}\n\n// definition\n\nSEXP file76c933e419c1( SEXP x, SEXP y ){\nBEGIN_RCPP\n\n\t\tint dim = as<int>( x ) ;\n\t\tarma::mat z = as<double>(y) * arma::eye<arma::mat>( dim, dim ) ;\n\t\treturn wrap( arma::accu(z) ) ;\n\t\nEND_RCPP\n}\n\n\n"
But the example models from
model <- stan_demo()
produce the same error (attached).
Furthermore the error doesn't occur on my local machine - but I have to compile and run this model on the external machine.
Ben Goodrich
Sep 4, 2015, 9:58:51 AM9/4/15
to Stan users mailing list
On Friday, September 4, 2015 at 9:41:18 AM UTC-4, Christian Meister wrote:
Furthermore the error doesn't occur on my local machine - but I have to compile and run this model on the external machine.
My only guess is that the external machine has some combination of US and DE encoding that throws it off.
I would try doing
debug(cxxfunction)before calling stan() on the external machine and seeing if you can figure out why the lines are not in the proper order.
Ben
Christian Meister
Sep 8, 2015, 4:27:54 AM9/8/15
to Stan users mailing list
Am Freitag, 4. September 2015 15:58:51 UTC+2 schrieb Ben Goodrich:
My only guess is that the external machine has some combination of US and DE encoding that throws it off.
Ben, you were right. I changed all locale variables to "en_US.UTF-8". Now everything just works fine. Many thanks!
Ben Goodrich
Sep 8, 2015, 8:24:38 AM9/8/15
to Stan users mailing list
OK. I wish that were not necessary, but I'm glad it is working.
Ben
Bob Carpenter
Sep 8, 2015, 3:16:25 PM9/8/15
to stan-...@googlegroups.com
Yuck. UTF-8 is a unicode character encoding, whereas en_US
is presumably a locale. What does the locale control?
Any idea why de_DE (or whatever German in Germany is called) messes
up?
- Bob
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is presumably a locale. What does the locale control?
Any idea why de_DE (or whatever German in Germany is called) messes
up?
- Bob
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