rstan installation failing in Ubuntu 16.04

[Bruno Nicenboim]

Hi

I've just did a fresh install of Ubuntu 16.04, and I can't manage to install rstan. I may missing some package but I can't figure out which...

> sessionInfo()
R version 3.3.2 (2016-10-31)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.1 LTS

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C             
 [3] LC_TIME=de_DE.UTF-8        LC_COLLATE=en_US.UTF-8   
 [5] LC_MONETARY=de_DE.UTF-8    LC_MESSAGES=en_US.UTF-8  
 [7] LC_PAPER=de_DE.UTF-8       LC_NAME=C                
 [9] LC_ADDRESS=C               LC_TELEPHONE=C           
[11] LC_MEASUREMENT=de_DE.UTF-8 LC_IDENTIFICATION=C      

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base    

loaded via a namespace (and not attached):
[1] tools_3.3.2



> install.packages("rstan", repos = "https://cloud.r-project.org/", dependencies=TRUE)
Installing package into ‘/home/bruno/R/x86_64-pc-linux-gnu-library/3.3’
(as ‘lib’ is unspecified)
also installing the dependency ‘shinystan’

trying URL 'https://cloud.r-project.org/src/contrib/shinystan_2.2.1.tar.gz'
Content type 'application/x-gzip' length 2374842 bytes (2.3 MB)
==================================================
downloaded 2.3 MB

trying URL 'https://cloud.r-project.org/src/contrib/rstan_2.12.1.tar.gz'
Content type 'application/x-gzip' length 703340 bytes (686 KB)
==================================================
downloaded 686 KB

* installing *source* package ‘rstan’ ...
** package ‘rstan’ successfully unpacked and MD5 sums checked
** libs
g++ -I/usr/share/R/include -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -DFUSION_MAX_VECTOR_SIZE=12  -I"/home/bruno/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/bruno/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/bruno/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/bruno/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include"   -fpic  -O3 -mtune=native -march=native -Wno-unused-variable -Wno-unused-function -flto -ffat-lto-objects  -Wno-unused-local-typedefs -Wno-ignored-attributes -Wno-deprecated-declarations -c chains.cpp -o chains.o
g++ -I/usr/share/R/include -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -DFUSION_MAX_VECTOR_SIZE=12  -I"/home/bruno/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/bruno/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/bruno/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/bruno/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include"   -fpic  -O3 -mtune=native -march=native -Wno-unused-variable -Wno-unused-function -flto -ffat-lto-objects  -Wno-unused-local-typedefs -Wno-ignored-attributes -Wno-deprecated-declarations -c init.cpp -o init.o
g++ -I/usr/share/R/include -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -DFUSION_MAX_VECTOR_SIZE=12  -I"/home/bruno/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -I"/home/bruno/R/x86_64-pc-linux-gnu-library/3.3/RcppEigen/include" -I"/home/bruno/R/x86_64-pc-linux-gnu-library/3.3/BH/include" -I"/home/bruno/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include"   -fpic  -O3 -mtune=native -march=native -Wno-unused-variable -Wno-unused-function -flto -ffat-lto-objects  -Wno-unused-local-typedefs -Wno-ignored-attributes -Wno-deprecated-declarations -c lang__ast_def.cpp -o lang__ast_def.o
In file included from lang__ast_def.cpp:18:0:
/home/bruno/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include/src/stan/lang/ast_def.cpp: In constructor ‘stan::lang::printable::printable()’:
/home/bruno/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include/src/stan/lang/ast_def.cpp:760:43: error: no matching function for call to ‘boost::variant<boost::recursive_wrapper<std::__cxx11::basic_string<char> >, boost::recursive_wrapper<stan::lang::expression> >::variant(const char [1])’
     printable::printable() : printable_("") { }
                                           ^
In file included from /home/bruno/R/x86_64-pc-linux-gnu-library/3.3/BH/include/boost/variant/recursive_variant.hpp:36:0,
                 from /home/bruno/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include/src/stan/lang/ast_def.cpp:5,
                 from lang__ast_def.cpp:18:
/home/bruno/R/x86_64-pc-linux-gnu-library/3.3/BH/include/boost/variant/variant.hpp:1797:5: note: candidate: boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19>::variant(const boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19>&) [with T0_ = boost::recursive_wrapper<std::__cxx11::basic_string<char> >; T1 = boost::recursive_wrapper<stan::lang::expression>; T2 = boost::detail::variant::void_; T3 = boost::detail::variant::void_; T4 = boost::detail::variant::void_; T5 = boost::detail::variant::void_; T6 = boost::detail::variant::void_; T7 = boost::detail::variant::void_; T8 = boost::detail::variant::void_; T9 = boost::detail::variant::void_; T10 = boost::detail::variant::void_; T11 = boost::detail::variant::void_; T12 = boost::detail::variant::void_; T13 = boost::detail::variant::void_; T14 = boost::detail::variant::void_; T15 = boost::detail::variant::void_; T16 = boost::detail::variant::void_; T17 = boost::detail::variant::void_; T18 = boost::detail::variant::void_; T19 = boost::detail::variant::void_]
     variant(const variant& operand)
     ^
/home/bruno/R/x86_64-pc-linux-gnu-library/3.3/BH/include/boost/variant/variant.hpp:1797:5: note:   no known conversion for argument 1 from ‘const char [1]’ to ‘const boost::variant<boost::recursive_wrapper<std::__cxx11::basic_string<char> >, boost::recursive_wrapper<stan::lang::expression> >&’
/home/bruno/R/x86_64-pc-linux-gnu-library/3.3/BH/include/boost/variant/variant.hpp:1768:5: note: candidate: template<class T> boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19>::variant(T&, typename boost::enable_if<boost::mpl::and_<boost::mpl::not_<boost::is_const<T> >, boost::mpl::not_<boost::is_same<T, boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19> > >, boost::detail::variant::is_variant_constructible_from<T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19>::is_recursive_, T0_, boost::mpl::identity<T> >::type, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19>::is_recursive_, T0_, boost::mpl::identity<T> >::type, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<mpl_::void_> > >::type> > >::type*)
     variant(
     ^
/home/bruno/R/x86_64-pc-linux-gnu-library/3.3/BH/include/boost/variant/variant.hpp:1768:5: note:   template argument deduction/substitution failed:
/home/bruno/R/x86_64-pc-linux-gnu-library/3.3/BH/include/boost/variant/variant.hpp: In substitution of ‘template<class T> boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19>::variant(T&, typename boost::enable_if<boost::mpl::and_<boost::mpl::not_<boost::is_const<T> >, boost::mpl::not_<boost::is_same<T, boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19> > >, boost::detail::variant::is_variant_constructible_from<T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19>::is_recursive_, T0_, boost::mpl::identity<T> >::type, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19>::is_recursive_, T0_, boost::mpl::identity<T> >::type, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<mpl_::void_> > >::type> > >::type*) [with T = const char [1]]’:
/home/bruno/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include/src/stan/lang/ast_def.cpp:760:43:   required from here
/home/bruno/R/x86_64-pc-linux-gnu-library/3.3/BH/include/boost/variant/variant.hpp:1768:5: error: no type named ‘type’ in ‘struct boost::enable_if<boost::mpl::and_<boost::mpl::not_<boost::is_const<const char [1]> >, boost::mpl::not_<boost::is_same<const char [1], boost::variant<boost::recursive_wrapper<std::__cxx11::basic_string<char> >, boost::recursive_wrapper<stan::lang::expression> > > >, boost::detail::variant::is_variant_constructible_from<const char (&)[1], boost::mpl::l_item<mpl_::long_<2l>, boost::recursive_wrapper<std::__cxx11::basic_string<char> >, boost::mpl::l_item<mpl_::long_<1l>, boost::recursive_wrapper<stan::lang::expression>, boost::mpl::l_end> > >, mpl_::bool_<true>, mpl_::bool_<true> >, void>’
/home/bruno/R/x86_64-pc-linux-gnu-library/3.3/BH/include/boost/variant/variant.hpp:1758:5: note: candidate: template<class T> boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19>::variant(const T&, typename boost::enable_if<boost::mpl::and_<boost::mpl::not_<boost::is_same<T, boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19> > >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19>::is_recursive_, T0_, boost::mpl::identity<T> >::type, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19>::is_recursive_, T0_, boost::mpl::identity<T> >::type, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<mpl_::void_> > >::type> > >::type*)
     variant(const T& operand,
     ^
/home/bruno/R/x86_64-pc-linux-gnu-library/3.3/BH/include/boost/variant/variant.hpp:1758:5: note:   template argument deduction/substitution failed:
/home/bruno/R/x86_64-pc-linux-gnu-library/3.3/BH/include/boost/variant/variant.hpp: In substitution of ‘template<class T> boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19>::variant(const T&, typename boost::enable_if<boost::mpl::and_<boost::mpl::not_<boost::is_same<T, boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19> > >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19>::is_recursive_, T0_, boost::mpl::identity<T> >::type, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19>::is_recursive_, T0_, boost::mpl::identity<T> >::type, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<mpl_::void_> > >::type> > >::type*) [with T = char [1]]’:
/home/bruno/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include/src/stan/lang/ast_def.cpp:760:43:   required from here
/home/bruno/R/x86_64-pc-linux-gnu-library/3.3/BH/include/boost/variant/variant.hpp:1758:5: error: no type named ‘type’ in ‘struct boost::enable_if<boost::mpl::and_<boost::mpl::not_<boost::is_same<char [1], boost::variant<boost::recursive_wrapper<std::__cxx11::basic_string<char> >, boost::recursive_wrapper<stan::lang::expression> > > >, boost::detail::variant::is_variant_constructible_from<const char (&)[1], boost::mpl::l_item<mpl_::long_<2l>, boost::recursive_wrapper<std::__cxx11::basic_string<char> >, boost::mpl::l_item<mpl_::long_<1l>, boost::recursive_wrapper<stan::lang::expression>, boost::mpl::l_end> > >, mpl_::bool_<true>, mpl_::bool_<true>, mpl_::bool_<true> >, void>’
In file included from /home/bruno/R/x86_64-pc-linux-gnu-library/3.3/BH/include/boost/variant/recursive_variant.hpp:36:0,
                 from /home/bruno/R/x86_64-pc-linux-gnu-library/3.3/StanHeaders/include/src/stan/lang/ast_def.cpp:5,
                 from lang__ast_def.cpp:18:
/home/bruno/R/x86_64-pc-linux-gnu-library/3.3/BH/include/boost/variant/variant.hpp:1422:5: note: candidate: boost::variant<T0, T1, T2, T3, T4, T5, T6, T7, T8, T9, T10, T11, T12, T13, T14, T15, T16, T17, T18, T19>::variant() [with T0_ = boost::recursive_wrapper<std::__cxx11::basic_string<char> >; T1 = boost::recursive_wrapper<stan::lang::expression>; T2 = boost::detail::variant::void_; T3 = boost::detail::variant::void_; T4 = boost::detail::variant::void_; T5 = boost::detail::variant::void_; T6 = boost::detail::variant::void_; T7 = boost::detail::variant::void_; T8 = boost::detail::variant::void_; T9 = boost::detail::variant::void_; T10 = boost::detail::variant::void_; T11 = boost::detail::variant::void_; T12 = boost::detail::variant::void_; T13 = boost::detail::variant::void_; T14 = boost::detail::variant::void_; T15 = boost::detail::variant::void_; T16 = boost::detail::variant::void_; T17 = boost::detail::variant::void_; T18 = boost::detail::variant::void_; T19 = boost::detail::variant::void_]
     variant()
     ^
/home/bruno/R/x86_64-pc-linux-gnu-library/3.3/BH/include/boost/variant/variant.hpp:1422:5: note:   candidate expects 0 arguments, 1 provided
At global scope:
cc1plus: warning: unrecognized command line option ‘-Wno-ignored-attributes’
/usr/lib/R/etc/Makeconf:141: recipe for target 'lang__ast_def.o' failed
make: *** [lang__ast_def.o] Error 1
ERROR: compilation failed for package ‘rstan’
* removing ‘/home/bruno/R/x86_64-pc-linux-gnu-library/3.3/rstan’
ERROR: dependency ‘rstan’ is not available for package ‘shinystan’
* removing ‘/home/bruno/R/x86_64-pc-linux-gnu-library/3.3/shinystan’

The downloaded source packages are in
    ‘/tmp/RtmpDx5mY9/downloaded_packages’
Warning messages:
1: In install.packages("rstan", repos = "https://cloud.r-project.org/",  :
  installation of package ‘rstan’ had non-zero exit status
2: In install.packages("rstan", repos = "https://cloud.r-project.org/",  :
  installation of package ‘shinystan’ had non-zero exit status

[Ben Goodrich]

On Sunday, November 20, 2016 at 4:26:44 PM UTC-5, Bruno Nicenboim wrote:

I've just did a fresh install of Ubuntu 16.04, and I can't manage to install rstan. I may missing some package but I can't figure out which...

Just try again. The StanHeaders package was broken for a day or two.

Ben

[Daniel Lee]

Just a quick question: do you know version of by you've installed? Stan 2.12 doesn't work with Boost 1.62 as far as I know. 

And what version of g++?

Daniel

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[Bruno Nicenboim]

On Sun, Nov 20, 2016 at 10:37 PM, Daniel Lee <bea...@alum.mit.edu> wrote:

Just a quick question: do you know version of by you've installed?

sorry, what version of what exactly?  

Stan 2.12 doesn't work with Boost 1.62 as far as I know. 

How do I check the version of Boost? if it's libboost it says 1.58

And what version of g++?

g++ says 4:5.3.1-1ubuntu1
 

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Bruno Nicenboim

[Daniel Lee]

sorry -- I typed too quickly. I meant the bh package.

But I'd follow Ben's directions first.

Daniel

[Bruno Nicenboim]

Hi Ben,

I could install StanHeaders without problems, but then when I try with

> install.packages("rstan", repos = "https://cloud.r-project.org/", dependencies=TRUE)

I still get the same errors

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Bests,

Bruno Nicenboim

[Bruno Nicenboim]

Hi,

ok I solved it. The fresh installation installed the latest BH 1.62, which doesn't work with rstan. I just installed the previous BH, and everything seems to be working.

Bests,

Bruno

[Bob Carpenter]

Ben's about to patch things so RStan will work with BH 1.62.
Stay tuned.

- Bob

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[Ben Goodrich]

On Monday, November 21, 2016 at 3:12:42 AM UTC-5, Bob Carpenter wrote:

Ben's about to patch things so RStan will work with BH 1.62.
Stay tuned.

That already happened. That's why I was saying the OP just needed to try again. But installing the old BH is fine too.