Build failed in Jenkins: Stan #264
mc.sta...@gmail.com
Changes:
[ca...@alias-i.com] moved distributions
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[...truncated 940 lines...]
[ OK ] io_reader.pos_ordered_constrain_jacobian (0 ms)
[ RUN ] io_reader.corr_matrix
[ OK ] io_reader.corr_matrix (0 ms)
[ RUN ] io_reader.corr_matrix_exception
[ OK ] io_reader.corr_matrix_exception (0 ms)
[ RUN ] io_reader.corr_matrix_constrain
[ OK ] io_reader.corr_matrix_constrain (0 ms)
[ RUN ] io_reader.corr_matrix_constrain_jacobian
[ OK ] io_reader.corr_matrix_constrain_jacobian (0 ms)
[ RUN ] io_reader.cov_matrix
[ OK ] io_reader.cov_matrix (0 ms)
[ RUN ] io_reader.cov_matrix_exception
[ OK ] io_reader.cov_matrix_exception (0 ms)
[ RUN ] io_reader.cov_matrix_constrain
[ OK ] io_reader.cov_matrix_constrain (0 ms)
[ RUN ] io_reader.cov_matrix_constrain_jacobian
[ OK ] io_reader.cov_matrix_constrain_jacobian (0 ms)
[ RUN ] io_reader.eos_exception
[ OK ] io_reader.eos_exception (0 ms)
[ RUN ] io_reader.lub_exception
[ OK ] io_reader.lub_exception (0 ms)
[----------] 48 tests from io_reader (0 ms total)
[----------] Global test environment tear-down
[==========] 48 tests from 1 test case ran. (0 ms total)
[ PASSED ] 48 tests.
================================================================================
================================================================================
g++-4 -O0 -Wall -g -DNDEBUG -I src -I lib -std=gnu++0x -I lib/gtest/include -I lib/gtest -DGTEST_HAS_PTHREAD=0 src/test/io/writer_test.cpp lib/gtest/src/gtest_main.cc ar/libgtest.a -o test/io/writer
In file included from src/test/io/writer_test.cpp:4:0:
src/stan/io/writer.hpp: In member function ‘void stan::io::writer<T>::pos_ordered_unconstrain(Eigen::Matrix<Scalar, -0x000000001, 1>&) [with T = double]’:
src/test/io/writer_test.cpp:94:3: instantiated from here
src/stan/io/writer.hpp:229:24: warning: comparison between signed and unsigned integer expressions
src/stan/io/writer.hpp: In member function ‘void stan::io::writer<T>::cov_matrix_unconstrain(Eigen::Matrix<LhsScalar, -0x000000001, -0x000000001, 0>&) [with T = double]’:
src/test/io/writer_test.cpp:151:3: instantiated from here
src/stan/io/writer.hpp:340:2: warning: comparison between signed and unsigned integer expressions
In file included from src/stan/io/writer.hpp:10:0,
from src/test/io/writer_test.cpp:4:
src/stan/prob/transform.hpp: In function ‘bool stan::prob::pos_ordered_validate(const Eigen::Matrix<Scalar, -0x000000001, 1>&) [with T = double]’:
src/stan/io/writer.hpp:226:2: instantiated from ‘void stan::io::writer<T>::pos_ordered_unconstrain(Eigen::Matrix<Scalar, -0x000000001, 1>&) [with T = double]’
src/test/io/writer_test.cpp:94:3: instantiated from here
src/stan/prob/transform.hpp:1054:29: warning: comparison between signed and unsigned integer expressions
src/stan/prob/transform.hpp: In function ‘bool stan::prob::simplex_validate(const Eigen::Matrix<Scalar, -0x000000001, 1>&) [with T = double]’:
src/stan/io/writer.hpp:284:2: instantiated from ‘void stan::io::writer<T>::simplex_unconstrain(Eigen::Matrix<Scalar, -0x000000001, 1>&) [with T = double]’
src/test/io/writer_test.cpp:113:3: instantiated from here
src/stan/prob/transform.hpp:933:29: warning: comparison between signed and unsigned integer expressions
src/stan/prob/transform.hpp: In function ‘bool stan::prob::corr_matrix_validate(const Eigen::Matrix<LhsScalar, -0x000000001, -0x000000001, 0>&) [with T = double]’:
src/stan/io/writer.hpp:309:2: instantiated from ‘void stan::io::writer<T>::corr_matrix_unconstrain(Eigen::Matrix<LhsScalar, -0x000000001, -0x000000001, 0>&) [with T = double]’
src/test/io/writer_test.cpp:132:3: instantiated from here
src/stan/prob/transform.hpp:1179:29: warning: comparison between signed and unsigned integer expressions
src/stan/maths/special_functions.hpp: At global scope:
src/stan/maths/special_functions.hpp:535:19: warning: ‘double stan::maths::log_sum_exp(const std::vector<double>&)’ defined but not used
test/io/writer --gtest_output="xml:test/io/writer.xml"
Running main() from gtest_main.cc
[==========] Running 10 tests from 1 test case.
[----------] Global test environment set-up.
[----------] 10 tests from io_writer
[ RUN ] io_writer.scalar_pos_unconstrain_exception
[ OK ] io_writer.scalar_pos_unconstrain_exception (0 ms)
[ RUN ] io_writer.scalar_lb_unconstrain_exception
[ OK ] io_writer.scalar_lb_unconstrain_exception (0 ms)
[ RUN ] io_writer.scalar_ub_unconstrain_exception
[ OK ] io_writer.scalar_ub_unconstrain_exception (0 ms)
[ RUN ] io_writer.scalar_lub_unconstrain_exception
[ OK ] io_writer.scalar_lub_unconstrain_exception (0 ms)
[ RUN ] io_writer.corr_unconstrain_exception
[ OK ] io_writer.corr_unconstrain_exception (0 ms)
[ RUN ] io_writer.prob_unconstrain_exception
[ OK ] io_writer.prob_unconstrain_exception (0 ms)
[ RUN ] io_writer.pos_ordered_unconstrain_exception
[ OK ] io_writer.pos_ordered_unconstrain_exception (0 ms)
[ RUN ] io_writer.simplex_unconstrain_exception
[ OK ] io_writer.simplex_unconstrain_exception (0 ms)
[ RUN ] io_writer.corr_matrix_unconstrain_exception
[ OK ] io_writer.corr_matrix_unconstrain_exception (0 ms)
[ RUN ] io_writer.cov_matrix_unconstrain_exception
[ OK ] io_writer.cov_matrix_unconstrain_exception (0 ms)
[----------] 10 tests from io_writer (0 ms total)
[----------] Global test environment tear-down
[==========] 10 tests from 1 test case ran. (0 ms total)
[ PASSED ] 10 tests.
================================================================================
================================================================================
g++-4 -O0 -Wall -g -DNDEBUG -I src -I lib -std=gnu++0x -I lib/gtest/include -I lib/gtest -DGTEST_HAS_PTHREAD=0 src/test/maths/matrix_test.cpp lib/gtest/src/gtest_main.cc ar/libgtest.a -o test/maths/matrix
In file included from src/test/maths/matrix_test.cpp:3:0:
lib/gtest/include/gtest/gtest.h: In function ‘testing::AssertionResult testing::internal::CmpHelperEQ(const char*, const char*, const T1&, const T2&) [with T1 = unsigned int, T2 = int]’:
lib/gtest/include/gtest/gtest.h:1353:30: instantiated from ‘static testing::AssertionResult testing::internal::EqHelper<lhs_is_null_literal>::Compare(const char*, const char*, const T1&, const T2&) [with T1 = unsigned int, T2 = int, bool lhs_is_null_literal = false]’
src/test/maths/matrix_test.cpp:34:3: instantiated from here
lib/gtest/include/gtest/gtest.h:1316:3: warning: comparison between signed and unsigned integer expressions
test/maths/matrix --gtest_output="xml:test/maths/matrix.xml"
Running main() from gtest_main.cc
[==========] Running 22 tests from 1 test case.
[----------] Global test environment set-up.
[----------] 22 tests from matrix_test
[ RUN ] matrix_test.resize_double
[ OK ] matrix_test.resize_double (0 ms)
[ RUN ] matrix_test.resize_svec_double
[ OK ] matrix_test.resize_svec_double (0 ms)
[ RUN ] matrix_test.resize_vec_double
[ OK ] matrix_test.resize_vec_double (0 ms)
[ RUN ] matrix_test.resize_rvec_double
[ OK ] matrix_test.resize_rvec_double (0 ms)
[ RUN ] matrix_test.resize_mat_double
[ OK ] matrix_test.resize_mat_double (0 ms)
[ RUN ] matrix_test.resize_svec_svec_double
[ OK ] matrix_test.resize_svec_svec_double (0 ms)
[ RUN ] matrix_test.resize_svec_v_double
[ OK ] matrix_test.resize_svec_v_double (0 ms)
[ RUN ] matrix_test.resize_svec_rv_double
[ OK ] matrix_test.resize_svec_rv_double (0 ms)
[ RUN ] matrix_test.resize_svec_svec_matrix_double
[ OK ] matrix_test.resize_svec_svec_matrix_double (0 ms)
[ RUN ] matrix_test.add_v_exception
[ OK ] matrix_test.add_v_exception (0 ms)
[ RUN ] matrix_test.add_rv_exception
[ OK ] matrix_test.add_rv_exception (0 ms)
[ RUN ] matrix_test.add_m_exception
[ OK ] matrix_test.add_m_exception (0 ms)
[ RUN ] matrix_test.subtract_v_exception
[ OK ] matrix_test.subtract_v_exception (0 ms)
[ RUN ] matrix_test.subtract_rv_exception
[ OK ] matrix_test.subtract_rv_exception (0 ms)
[ RUN ] matrix_test.subtract_m_exception
[ OK ] matrix_test.subtract_m_exception (0 ms)
[ RUN ] matrix_test.multiply_rv_v_exception
[ OK ] matrix_test.multiply_rv_v_exception (0 ms)
[ RUN ] matrix_test.multiply_m_v_exception
[ OK ] matrix_test.multiply_m_v_exception (0 ms)
[ RUN ] matrix_test.multiply_rv_m_exception
[ OK ] matrix_test.multiply_rv_m_exception (0 ms)
[ RUN ] matrix_test.multiply_m_m_exception
[ OK ] matrix_test.multiply_m_m_exception (0 ms)
[ RUN ] matrix_test.cholesky_decompose_exception
[ OK ] matrix_test.cholesky_decompose_exception (0 ms)
[ RUN ] matrix_test.std_vector_sum_double
[ OK ] matrix_test.std_vector_sum_double (0 ms)
[ RUN ] matrix_test.std_vector_sum_int
[ OK ] matrix_test.std_vector_sum_int (0 ms)
[----------] 22 tests from matrix_test (0 ms total)
[----------] Global test environment tear-down
[==========] 22 tests from 1 test case ran. (0 ms total)
[ PASSED ] 22 tests.
================================================================================
================================================================================
g++-4 -O0 -Wall -g -DNDEBUG -I src -I lib -std=gnu++0x -I lib/gtest/include -I lib/gtest -DGTEST_HAS_PTHREAD=0 src/test/maths/special_functions_test.cpp lib/gtest/src/gtest_main.cc ar/libgtest.a -o test/maths/special_functions
In file included from src/test/maths/special_functions_test.cpp:3:0:
lib/gtest/include/gtest/gtest.h: In function ‘testing::AssertionResult testing::internal::CmpHelperEQ(const char*, const char*, const T1&, const T2&) [with T1 = int, T2 = unsigned int]’:
lib/gtest/include/gtest/gtest.h:1393:30: instantiated from ‘static testing::AssertionResult testing::internal::EqHelper<true>::Compare(const char*, const char*, const T1&, const T2&, typename testing::internal::EnableIf<(! testing::internal::is_pointer<T2>::value)>::type*) [with T1 = int, T2 = unsigned int, typename testing::internal::EnableIf<(! testing::internal::is_pointer<T2>::value)>::type = void]’
src/test/maths/special_functions_test.cpp:7:3: instantiated from here
lib/gtest/include/gtest/gtest.h:1316:3: warning: comparison between signed and unsigned integer expressions
src/stan/maths/special_functions.hpp: At global scope:
src/stan/maths/special_functions.hpp:535:19: warning: ‘double stan::maths::log_sum_exp(const std::vector<double>&)’ defined but not used
test/maths/special_functions --gtest_output="xml:test/maths/special_functions.xml"
Running main() from gtest_main.cc
[==========] Running 22 tests from 1 test case.
[----------] Global test environment set-up.
[----------] 22 tests from MathsSpecialFunctions
[ RUN ] MathsSpecialFunctions.int_step
[ OK ] MathsSpecialFunctions.int_step (0 ms)
[ RUN ] MathsSpecialFunctions.binomial_coefficient_log
[ OK ] MathsSpecialFunctions.binomial_coefficient_log (0 ms)
[ RUN ] MathsSpecialFunctions.fma
[ OK ] MathsSpecialFunctions.fma (0 ms)
[ RUN ] MathsSpecialFunctions.beta_log
[ OK ] MathsSpecialFunctions.beta_log (0 ms)
[ RUN ] MathsSpecialFunctions.inv_logit
[ OK ] MathsSpecialFunctions.inv_logit (0 ms)
[ RUN ] MathsSpecialFunctions.log1m
[ OK ] MathsSpecialFunctions.log1m (0 ms)
[ RUN ] MathsSpecialFunctions.log_loss
[ OK ] MathsSpecialFunctions.log_loss (0 ms)
[ RUN ] MathsSpecialFunctions.exp2
[ OK ] MathsSpecialFunctions.exp2 (0 ms)
[ RUN ] MathsSpecialFunctions.log2
[ OK ] MathsSpecialFunctions.log2 (0 ms)
[ RUN ] MathsSpecialFunctions.fdim
[ OK ] MathsSpecialFunctions.fdim (0 ms)
[ RUN ] MathsSpecialFunctions.step
[ OK ] MathsSpecialFunctions.step (0 ms)
[ RUN ] MathsSpecialFunctions.inv_cloglog
[ OK ] MathsSpecialFunctions.inv_cloglog (0 ms)
[ RUN ] MathsSpecialFunctions.Phi
[ OK ] MathsSpecialFunctions.Phi (0 ms)
[ RUN ] MathsSpecialFunctions.softmax
[ OK ] MathsSpecialFunctions.softmax (0 ms)
[ RUN ] MathsSpecialFunctions.softmax_exception
[ OK ] MathsSpecialFunctions.softmax_exception (0 ms)
[ RUN ] MathsSpecialFunctions.inverse_softmax_exception
[ OK ] MathsSpecialFunctions.inverse_softmax_exception (0 ms)
[ RUN ] MathsSpecialFunctions.log1p
[ OK ] MathsSpecialFunctions.log1p (0 ms)
[ RUN ] MathsSpecialFunctions.log1p_exception
[ OK ] MathsSpecialFunctions.log1p_exception (0 ms)
[ RUN ] MathsSpecialFunctions.lmgamma
[ OK ] MathsSpecialFunctions.lmgamma (0 ms)
[ RUN ] MathsSpecialFunctions.if_else
[ OK ] MathsSpecialFunctions.if_else (0 ms)
[ RUN ] MathsSpecialFunctions.square
[ OK ] MathsSpecialFunctions.square (0 ms)
[ RUN ] MathsSpecialFunctions.multiply_log
[ OK ] MathsSpecialFunctions.multiply_log (0 ms)
[----------] 22 tests from MathsSpecialFunctions (0 ms total)
[----------] Global test environment tear-down
[==========] 22 tests from 1 test case ran. (0 ms total)
[ PASSED ] 22 tests.
================================================================================
================================================================================
g++-4 -O0 -Wall -g -DNDEBUG -I src -I lib -std=gnu++0x -I lib/gtest/include -I lib/gtest -DGTEST_HAS_PTHREAD=0 src/test/memory/stack_alloc_test.cpp lib/gtest/src/gtest_main.cc ar/libgtest.a -o test/memory/stack_alloc
test/memory/stack_alloc --gtest_output="xml:test/memory/stack_alloc.xml"
Running main() from gtest_main.cc
[==========] Running 1 test from 1 test case.
[----------] Global test environment set-up.
[----------] 1 test from stack_alloc
[ RUN ] stack_alloc.alloc
[ OK ] stack_alloc.alloc (46 ms)
[----------] 1 test from stack_alloc (46 ms total)
[----------] Global test environment tear-down
[==========] 1 test from 1 test case ran. (46 ms total)
[ PASSED ] 1 test.
================================================================================
================================================================================
g++-4 -O0 -Wall -g -DNDEBUG -I src -I lib -std=gnu++0x -I lib/gtest/include -I lib/gtest -DGTEST_HAS_PTHREAD=0 src/test/meta/traits_test.cpp lib/gtest/src/gtest_main.cc ar/libgtest.a -o test/meta/traits
src/stan/agrad/agrad.hpp:2093:17: warning: ‘void stan::agrad::free_memory()’ defined but not used
test/meta/traits --gtest_output="xml:test/meta/traits.xml"
Running main() from gtest_main.cc
[==========] Running 1 test from 1 test case.
[----------] Global test environment set-up.
[----------] 1 test from traitsTest
[ RUN ] traitsTest.isConstant
[ OK ] traitsTest.isConstant (0 ms)
[----------] 1 test from traitsTest (0 ms total)
[----------] Global test environment tear-down
[==========] 1 test from 1 test case ran. (0 ms total)
[ PASSED ] 1 test.
================================================================================
================================================================================
g++-4 -O0 -Wall -g -DNDEBUG -I src -I lib -std=gnu++0x -I lib/gtest/include -I lib/gtest -DGTEST_HAS_PTHREAD=0 src/test/prob/distributions_bernoulli_test.cpp lib/gtest/src/gtest_main.cc ar/libgtest.a -o test/prob/distributions_bernoulli
src/test/prob/distributions_bernoulli_test.cpp:2:49: fatal error: stan/prob/distributions_bernoulli.hpp: No such file or directory
compilation terminated.
make: *** [test/prob/distributions_bernoulli] Error 1
<http://d1m1s1b1.stat.columbia.edu:8080/job/Stan/ws/>exit> 2
Build step 'Execute Windows batch command' marked build as failure
Recording test results