No polymorphic or variant sites for one population

29 views

Skip to first unread message

unread,

Mar 16, 2022, 10:12:13 PM3/16/22

to Stacks

From populations.sumstats_summary:

One population has no sites, and 2 others have very low. What could cause this?

Thanks in advance!

-Emily

unread,

Mar 18, 2022, 9:10:35 AM3/18/22

to stacks...@googlegroups.com

Examine your coverage and levels of pcr duplicates for members of that population. -julian

From: stacks...@googlegroups.com <stacks...@googlegroups.com> on behalf of auvoirle...@gmail.com <auvoirle...@gmail.com>
Date: Thursday, March 17, 2022 at 2:12 AM
To: Stacks <stacks...@googlegroups.com>
Subject: [stacks] No polymorphic or variant sites for one population