mimb_stacks2-protocol question

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Marta Gomez-Buckley

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Nov 9, 2022, 8:24:02 PM11/9/22

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Dear Julian,

I have a question about the scripts that you and Angel shared (https://bitbucket.org/CatchenLab/mimb-stacks2-protocol/src/master/) for an example on how to generate summary statistics and plots for the Patagonian Blenny data. You use RADseq for this data. Could these shell scripts be used for ddRADseq data without a lot of modifications? other than not runing the remove PCR duplicates line for the param_optim script?

Thanks,

Marta

Catchen, Julian

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Nov 10, 2022, 11:22:02 AM11/10/22

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Hi Marta, yes the scripts can be used with ddRADseq data. -julian

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