pstacks is missing from v2.68

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Vinay K L

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Apr 24, 2025, 4:11:26 PMApr 24
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Hi team, 

I am trying to work with Stacks 2 and I see that 'pstacks' is missing in the compiled binary. I did came across a thread which indicated that the program is available after make install, but I do not see it (See attached)

After going through manual, I realized it is not listed in core pipeline of v2, but it is in v1. 

Would you please provide a way for me to get the older version? I seem to not able to find one. 

Thank you. Screenshot 2025-04-24 at 9.29.57 AM.png

Catchen, Julian

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Apr 24, 2025, 4:19:33 PMApr 24
to stacks...@googlegroups.com

The pstacks program is not part of Stacks v2. Its functionality was replaced by gstacks. See the Stacks documentation on our website or the protocol we published: “Population Genomics Analysis with RAD, Reprised: Stacks 2” (https://link.springer.com/protocol/10.1007/978-1-0716-2313-8_7).

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