Populations freezing on Now Processing

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Patricia M.

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Nov 10, 2025, 5:08:58 PMNov 10
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Hi all, 

We are attempting to run populations using gstacks files generated with gstacks v2.64. populations using stack version 2.64 or 2.68 freezes in endless loop

Now processing...
contig_#
contig_#
contig_#

No error message seen. 

populations -P ${samples} -M ${pop} -O ${out} -t 8 -p 2 -r .8 -R .7 --min-maf 0.05 --structure --genepop --write-single-snp --radpainter --smooth --verbose
 
Any idea why this might be happening?

Thanks, 
P.


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