tsv2bam issue (tsv2bam: bgzf.c:347: bgzf_hopen)

[Ondřej Korábek]

Dear,

I am encountering an issue with tsv2bam:

/usr/local/bin/tsv2bam -P /mnt/Data/ddRAD_phylogeny/assembly_ligata  --threads 16 -M /mnt/Data/ddRAD_phylogeny/demultiplexed/info/assembly_ligata.txt -R /mnt/Data/ddRAD_phylogeny/demultiplexed/
Logging to '/mnt/Data/ddRAD_phylogeny/assembly_ligata/tsv2bam.log'.
Configuration for this run:
  Stacks directory: '/mnt/Data/ddRAD_phylogeny/assembly_ligata/'
  Population map: '/mnt/Data/ddRAD_phylogeny/demultiplexed/info/assembly_ligata.txt'
  Num. samples: 123
  Paired-end reads directory: '/mnt/Data/ddRAD_phylogeny/demultiplexed/'
  Multithreaded.

Paired-end reads files found, e.g. '/mnt/Data/ddRAD_phylogeny/demultiplexed/ligata_8806.2.fq.gz'.
Loading the catalog...
Processing sample 'ligata_8809'...
Processing sample 'ligata_8818'...
Processing sample 'ligata_8817'...
Processing sample 'ligata_8814'...
Processing sample 'ligata_8806'...
Processing sample 'ligata_8819'...
Processing sample 'ligata_8820'...
Processing sample 'ligata_8811'...
Processing sample 'ligata_8815'...
Processing sample 'ligata_8813'...
Processing sample 'ligata_8808'...
Processing sample 'ligata_8823'...
Processing sample 'ligata_8822'...
Processing sample 'ligata_8821'...
Processing sample 'ligata_8810'...
Processing sample 'ligata_8816'...
tsv2bam: bgzf.c:347: bgzf_hopen: Assertion `compressBound(BGZF_BLOCK_SIZE) < BGZF_MAX_BLOCK_SIZE' failed.
Aborted (core dumped)

I have installed Stacks 2.68 on Fedora 41. tsv2bam starts to load the catalog and then each time it ends with the same error message. I googled a bit and it appears to be an issue that hstlib has with zlib-ng (https://github.com/alexdobin/STAR/issues/2063)
I tried this advice: https://github.com/samtools/htslib/issues/1257#issuecomment-804777479 and reinstalled Stacks, and it seems to work. However, it may be worth a fix. Please, could somebody look into this?
Best, Ondřej