Maintain Project directory structure in build directory

[Joshua Sullivan]

I would like to maintain my project directory structure with autodoc, but I can't seem to find the configuration options to do so. Basically I have my project and I have chosen not to create seperate build and source directories. Under my main project directory, I have a bunch of subdirectories and python files. When I use autodoc with sphinx it is currently creating a seperate HTML file for every single file like it should, but it is placing the file individually within the build folder instead of maintaining a similar directory structure to the one my project has. 

I would like my build folder and in turn my HTML index page to look like the following:

• Project name
• folder 1
• folder one
• file 1
• file 2
• folder two
• file 1
• file 2
• file 1
• file 2
• Folder 2
• ...

Where as currently it looks like:

• Project name
• file 1
• file 2
• file 1
• file 2
• file 1 
• file 2

How can I make it so that it maintains my project directory structure within my build folder as well as on the HTML page so that I can easily find the files I am looking for?

Any help would be greatly appreciated!! 

Thanks

[Joshua Sullivan (Verb Ext.)]

Nevermind, I found my issue. I was missing __init__.py files in my subdirectories. I had previously added these on a different branch I was working on that wasn't merged yet instead of adding them to the current branch I was working on. Thanks anyways!