MSFragger param

[Priti Panchal]

Hello all 

I need to run my file through the MSFragger pipeline in TPP. Can anyone share an MSFragger param file with me? 

Thanks and Regards

Priti 

PhD Scholar

Animal Biotechnology Centre, NDRI

Karnal

[Eric Deutsch]

MSFragger itself can generate one for you, just run something like:

 

/usr/bin/java -jar msfragger-3.2.one-jar.jar --config closed

mv closed_fragger.params msfragger.params

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[Priti Panchal]

Sir 

I need to upload the file at the "MSFragger search" step in TPP. I tried using the link sent above but could not get one. It would be a great help if you could share the text file of the parameter.

Thank you

Priti 

PhD Scholar

Animal Biotechnology Centre, NDRI

Karnal

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[Eric Deutsch]

ah, I see, okay, sure, I put one here:

http://www.tppms.org/tmp/msfragger.params