converting prot.xml to tsv file error

[Karla Joanna Rojas Mendez]

Hi,

when I convert the file interact.ipro.prot.xml to tsv the information in the .tsv file is incomplete the sln and ng information is empty an the number of proteins in the file it is also incomplete.

I don´t use any filter on the files, i convert them from the file that comes directly from the analysis.

 How can I fix this?

Thank you

[David Shteynberg]

Hello Karla,

Thanks to your bug report I was able to track down and correct an issue with tsv export from the ProtXMLViewer page.  This change will be made in the next release.  Meanwhile, if you can tell me the operating system where you are using the TPP I would be happy to send you an appropriate patch for testing.

Cheers!

-David

On Jul 30, 2024, at 11:08 AM, Karla Joanna Rojas Mendez <karla...@ibt.unam.mx> wrote:

Hi,

when I convert the file interact.ipro.prot.xml to tsv the information in the .tsv file is incomplete the sln and ng information is empty an the number of proteins in the file it is also incomplete.

I don´t use any filter on the files, i convert them from the file that comes directly from the analysis.

 How can I fix this?

Thank you

<Captura de pantalla 2024-07-30 115318.png><Captura de pantalla 2024-07-30 115504.png>

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<Captura de pantalla 2024-07-30 115318.png><Captura de pantalla 2024-07-30 115504.png>

[Karla Joanna Rojas Mendez]

Hello,

I am using windows 11.

thanks for your help

[David Shteynberg]

Hello Karla,

Please find the file of ProtXMLViewer.pl in your TPP installation directory, C:/TPP/cgi-bin/ ,and make a copy of this file for a backup, just in case.  Next, place the patched file attached to this message in the same directory.  This should fix the export of StPeter value using the ProtXMLViewer.pl web interface.  Keep us posted to your progress.

Cheers!

-David

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[Karla Joanna Rojas Mendez]

Hello David,

The file fixed the problem, thanks for your help.

Cheers.

[David Shteynberg]

Thank you for confirming!

To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/b34f8282-7bd2-4519-a00d-bb5806cb2383n%40googlegroups.com.