Greetings TPP folks,
I just pulled the latest Docker image and am trying to run the Kojak then PeptideProphet. Kojak runs fine, PeptideProphet produces an error. Here is my output:
```
sudo docker run -v `pwd`:/data spctools/tpp xinteract QEHFX_2019_0510_AZ_034_eh220_comet.pep.xml
xinteract (TPP v6.1.0 Parhelion, Build 202206071715-8676 (Linux-x86_64))
running: "/usr/local/tpp/bin/InteractParser 'interact.pep.xml' 'QEHFX_2019_0510_AZ_034_eh220_comet.pep.xml' -L'7'"
file 1: QEHFX_2019_0510_AZ_034_eh220_comet.pep.xml
processed altogether 77134 results
INFO: Results written to file: /data/interact.pep.xml
command completed in 5 sec
running: "/usr/local/tpp/bin/DatabaseParser 'interact.pep.xml'"
command completed in 1 sec
running: "/usr/local/tpp/bin/RefreshParser 'interact.pep.xml' '/data/EH217_3pepCnt_plusRev.fasta'"
enzyme name is:trypsin
- Building Commentz-Walter keyword tree...
- Searching the tree...
- Linking duplicate entries...
- Printing results...
- Mapped 42490 entries
command completed in 3 sec
using MAXEHFX_2019_0510_AZ_034_eh220_comet.pep.xml for PeptideProphet...
running: "/usr/local/tpp/bin/PeptideProphetParser 'interact.pep.xml'"
(Kojak)
init with Kojak trypsin
init Loop model with Kojak trypsin
adding XLSecondScoreFraction mixture distribution
adding XLTopExpectScore mixture distribution
init XL model with Kojak trypsin
PeptideProphet (TPP v6.1.0 Parhelion, Build 202206071715-8676 (Linux-x86_64)) AKeller@ISB
read in 0 1+, 0 2+, 0 3+, 0 4+, 0 5+, 0 6+, and 0 7+ spectra.
read in no data
MS Instrument info: Manufacturer: UNKNOWN, Model: UNKNOWN, Ionization: UNKNOWN, Analyzer: UNKNOWN, Detector: UNKNOWN
INFO: Processing xl MixtureModel ...
command "/usr/local/tpp/bin/PeptideProphetParser 'interact.pep.xml'" exited with non-zero exit code: 256
QUIT - the job is incomplete
```
I suspect the "read no data" line above, towards the end, is the culprit, but I can't guess what might be causing that. Do you have any ideas?
Thanks,
Mike Riffle