MSconvert stopped working

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Tim Fugmann

Sep 27, 2021, 4:57:56 PM9/27/21
to spctools-discuss
Dear all,

recently, msconvert stops in the middle of a Thermo raw file to mzxml conversion. For hours instead of minutes the conversion does not stop, but nothing happens. The command line code I use is:
msconvert %%A --mzXML --filter "peakPicking cwt snr=5 peakSpace=0.3 msLevel=1-" --64 --zlib --outdir mzxml
Is there a way to print error(?) messages to troubleshoot what is going on? Or is there a known bug that leads to such a problem? The GUI works fine and can convert the respective raw files. 
The proteowizard build is: 
ProteoWizard release: 3.0.1908 (43e675997)
Build date: Jan  8 2019 16:13:49

Thank you
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