New to TPP: finding FDR corresponding to probability
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RS
Jul 27, 2020, 12:41:30 PM7/27/20
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I'm new to TPP and trying to find the the probabilty correspnding to the Target FDR of 1%
Do I need to find it out from the following table? The probability corresponds 0.74 corresponds to 1% FDR?
ProteinProphet Table
Do I need to find it out from the following table? The probability corresponds 0.74 corresponds to 1% FDR?
ProteinProphet Table
David Shteynberg
Jul 27, 2020, 1:01:45 PM7/27/20
to spctools-discuss
Hello and welcome!
You are correct! That is the model-estimated error/sensitivity table for ProteinProphet, in this case. A table of this sort is generated for PeptideProphet model estimates, iProphet based model estimates or ProteinProphet model estimates depending on the file being considered.
Cheers,
-David
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