Problem installing TPP 5.2.0 in Fedora (Red Hat Enterprise Linux Server 7.6)

[sangramjit basu]

Hello,

I am trying to install TPP in my linux server having Fedora

Method 1 problem

I tried installing using wine but shoots the following error:

/usr/bin/wine: not an ELF binary... don't know how to load it

Method 2 problem

I tried installing by building it from source. The make command worked out well. But when I executed make install, it shot the following error

   creating: /home/genomics/SOFTWARE/TPP_tools/release_5-2-0/build/linux-x86_64/artifacts/comet_source_2018014/packages/ZedGraph.5.1.6/lib/net35-Client/zh-tw/
  inflating: /home/genomics/SOFTWARE/TPP_tools/release_5-2-0/build/linux-x86_64/artifacts/comet_source_2018014/packages/ZedGraph.5.1.6/lib/net35-Client/zh-tw/ZedGraph.resources.dll 
  inflating: /home/genomics/SOFTWARE/TPP_tools/release_5-2-0/build/linux-x86_64/artifacts/comet_source_2018014/packages/ZedGraph.5.1.6/ZedGraph.5.1.6.nupkg 
  inflating: /home/genomics/SOFTWARE/TPP_tools/release_5-2-0/build/linux-x86_64/artifacts/comet_source_2018014/resource.h 
cd /home/genomics/SOFTWARE/TPP_tools/release_5-2-0/build/linux-x86_64/artifacts/comet_source_2018014; make
make[1]: Entering directory `/home/genomics/SOFTWARE/TPP_tools/release_5-2-0/build/linux-x86_64/artifacts/comet_source_2018014'
g++ -O3 -Wall -Wextra -static -Wno-char-subscripts -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D__LINUX__ -IMSToolkit/include -ICometSearch Comet.cpp -c
In file included from CometSearch/Common.h:40,
                 from Comet.cpp:18:
MSToolkit/include/MSReader.h:96:80: error: invalid conversion from ‘char’ to ‘char*’ [-fpermissive]
   96 |   void writeFile(const char* c, MSFileFormat ff, MSObject& m, char* sha1Report='\0');
      |                                                                                ^~~~
      |                                                                                |
      |                                                                                char
Comet.cpp: In function ‘void LoadParameters(char*, CometInterfaces::ICometSearchManager*)’:
Comet.cpp:235:24: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict]
  235 |                sprintf(szVersion, "%s %s %s", szVersion, szRev1, szRev2);
      |                        ^~~~~~~~~              ~~~~~~~~~
make[1]: *** [Comet.o] Error 1
make[1]: Leaving directory `/home/genomics/SOFTWARE/TPP_tools/release_5-2-0/build/linux-x86_64/artifacts/comet_source_2018014'
make: *** [/home/genomics/SOFTWARE/TPP_tools/release_5-2-0/build/linux-x86_64/artifacts/comet_source_2018014/comet] Error 2

This is totally incomprehensible for me :( ....

Thanks and regards

[Jimmy Eng]

For your method 2 problem, see this solution posted by David back in April:

https://groups.google.com/forum/#!searchin/spctools-discuss/comet$20mstoolkit%7Csort:date/spctools-discuss/6_rYJ_9aefE/D5cEw0_mBgAJ

[sangramjit basu]

Yes. It worked like a charm. Thanks a lot.

I added the build/linux-x86_64/bin/ to bash, and when I call some of the modules, it gives the error

build/linux-x86_64/bin/InteractParser: /lib64/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by build/linux-x86_64/bin/InteractParser)
build/linux-x86_64/bin/InteractParser: /lib64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by build/linux-x86_64/bin/InteractParser)
build/linux-x86_64/bin/InteractParser: /lib64/libstdc++.so.6: version `CXXABI_1.3.9' not found (required by build/linux-x86_64/bin/InteractParser)
build/linux-x86_64/bin/InteractParser: /lib64/libstdc++.so.6: version `GLIBCXX_3.4.26' not found (required by build/linux-x86_64/bin/InteractParser)
build/linux-x86_64/bin/InteractParser: /lib64/libstdc++.so.6: version `GLIBCXX_3.4.21' not found (required by build/linux-x86_64/bin/InteractParser)

I understand the glib version is just one version short....i hope to fix it soon.