Re: [spctools-discuss] Problem with the decimal separator

[Joseph Slagel]

Hi Maria,

Which version of TPP are you using and are you using msconvert to do the conversion?

-Joe

On Thu, Jun 28, 2012 at 9:40 AM, Mariarita <mariarita...@gmail.com> wrote:

Hi,
I just started to use TPP, in ordet to use pep 3d, but during the file conversion (raw to mzXML) I heve the following error:

processing file: c:/Inetpub/wwwroot/ISB/data/1.RAW
[RawFile::ctor] Reading Thermo RAW files requires the decimal separator to be '.' - adjust regional/language settings in the Control Panel.
Error processing file c:/Inetpub/wwwroot/ISB/data/1.RAW

I have on my pc windows vista, I changed the language setting to English (USA), Italian language
Anyone can help me?

Mària

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[Mariarita Arenella]

Hi Joe,
I downloaded using the only link found: TPP_Setup_v4_4_VUVUZELA_rev_1.exe
and yes I'm using msconvert.
Mària

2012/6/28 Joseph Slagel <Joseph...@systemsbiology.org>

[Goran Mitulović]

Hello,
I also have this problem. Any chance to be solved soon?

Goran

--
Goxy

[Matthew Chambers]

Hi Maria and Goran,

You can solve it yourself by changing your decimal separator to be '.' in regional/language
settings. This is not an msconvert problem, it is a limitation of MSFileReader. Contact Thermo if
you want to add your complaints to our own (we've tried to get it changed!). :)

If your decimal separator is already '.' then that's a separate problem. Let me know.

Thanks,
-Matt

On 6/30/2012 5:49 PM, Goran Mitulović wrote:
> Hello,
> I also have this problem. Any chance to be solved soon?
>
> Goran
>
>
> On Fri, Jun 29, 2012 at 11:06 AM, Mariarita Arenella <mariarita...@gmail.com
> <mailto:mariarita...@gmail.com>> wrote:
>
> Hi Joe,
> I downloaded using the only link found: TPP_Setup_v4_4_VUVUZELA_rev_1.exe

> <http://sourceforge.net/projects/sashimi/files/Trans-Proteomic%20Pipeline%20%28TPP%29/TPP%20v4.4%20%28vuvuzela%29%20rev%201/TPP_Setup_v4_4_VUVUZELA_rev_1.exe/download>

>
> and yes I'm using msconvert.
> Mària
>

> 2012/6/28 Joseph Slagel <Joseph...@systemsbiology.org <mailto:Joseph...@systemsbiology.org>>

[Mariarita Arenella]

Hi Matt,
thanks a lot, but my decimal separator is already ".", I changed it before installing TPP  ("English (USA)") and it didn't work. What should I do? Have you any idea?..Please help me!!
Thanks,
Mària

2012/7/2 Matthew Chambers <matt.ch...@gmail.com>

Hi Maria and Goran,

You can solve it yourself by changing your decimal separator to be '.' in regional/language settings. This is not an msconvert problem, it is a limitation of MSFileReader. Contact Thermo if you want to add your complaints to our own (we've tried to get it changed!). :)

If your decimal separator is already '.' then that's a separate problem. Let me know.

Thanks,
-Matt

On 6/30/2012 5:49 PM, Goran Mitulović wrote:

Hello,
I also have this problem. Any chance to be solved soon?

Goran


On Fri, Jun 29, 2012 at 11:06 AM, Mariarita Arenella <mariarita...@gmail.com

<mailto:mariarita.arenella@gmail.com>> wrote:

    Hi Joe,
    I downloaded using the only link found: TPP_Setup_v4_4_VUVUZELA_rev_1.exe

    <http://sourceforge.net/projects/sashimi/files/Trans-Proteomic%20Pipeline%20%28TPP%29/TPP%20v4.4%20%28vuvuzela%29%20rev%201/TPP_Setup_v4_4_VUVUZELA_rev_1.exe/download>

    and yes I'm using msconvert.
    Mària

    2012/6/28 Joseph Slagel <Joseph.Slagel@systemsbiology.org <mailto:Joseph.Slagel@systemsbiology.org>>

        Hi Maria,

        Which version of TPP are you using and are you using msconvert to do the conversion?

        -Joe



        On Thu, Jun 28, 2012 at 9:40 AM, Mariarita <mariarita...@gmail.com

        <mailto:mariarita.arenella@gmail.com>> wrote:

            Hi,
            I just started to use TPP, in ordet to use pep 3d, but during the file conversion (raw
            to mzXML) I heve the following error:

            processing file: c:/Inetpub/wwwroot/ISB/data/1.RAW
            [RawFile::ctor] Reading Thermo RAW files requires the decimal separator to be '.' - adjust regional/language settings in the Control Panel.
            Error processing file c:/Inetpub/wwwroot/ISB/data/1.RAW

            I have on my pc windows vista, I changed the language setting to English (USA), Italian language
            Anyone can help me?

            Mària

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[Goran Mitulović]

Hi Matt,
I also did change long ago because I needed for other programs.
Thank you for your help!
Goran

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Goxy

[Matthew Chambers]

That's puzzling. The "list separator" also has to be ";" but that's a separate error message. I
wonder if your "." is actually some different unicode character? Please copy/paste it from the
regional language dialog to your reply.

-Matt

On 7/3/2012 3:15 AM, Mariarita Arenella wrote:
> Hi Matt,
> thanks a lot, but my decimal separator is already ".", I changed it before installing TPP ("English
> (USA)") and it didn't work. What should I do? Have you any idea?..Please help me!!
> Thanks,
> Mària
>

> 2012/7/2 Matthew Chambers <matt.ch...@gmail.com <mailto:matt.ch...@gmail.com>>

[Goran Mitulović]

Hi Matt,
see the screen-shot below:

On Tue, Jul 3, 2012 at 11:03 PM, Matthew Chambers <matt.ch...@gmail.com> wrote:

That's puzzling. The "list separator" also has to be ";" but that's a separate error message. I wonder if your "." is actually some different unicode character? Please copy/paste it from the regional language dialog to your reply.

-Matt

On 7/3/2012 3:15 AM, Mariarita Arenella wrote:

Hi Matt,
thanks a lot, but my decimal separator is already ".", I changed it before installing TPP  ("English
(USA)") and it didn't work. What should I do? Have you any idea?..Please help me!!
Thanks,
Mària

2012/7/2 Matthew Chambers <matt.ch...@gmail.com <mailto:matt.chambers42@gmail.com>>

    Hi Maria and Goran,

    You can solve it yourself by changing your decimal separator to be '.' in regional/language
    settings. This is not an msconvert problem, it is a limitation of MSFileReader. Contact Thermo
    if you want to add your complaints to our own (we've tried to get it changed!). :)

    If your decimal separator is already '.' then that's a separate problem. Let me know.

    Thanks,
    -Matt



    On 6/30/2012 5:49 PM, Goran Mitulović wrote:

        Hello,
        I also have this problem. Any chance to be solved soon?

        Goran

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Goxy

[Mariarita Arenella]

I tried to do that  as first thing and it didn't work, then I changed the language in "English USA"...and it didn't work as well!!
Mària

2012/7/3 Matthew Chambers <matt.ch...@gmail.com>

That's puzzling. The "list separator" also has to be ";" but that's a separate error message. I wonder if your "." is actually some different unicode character? Please copy/paste it from the regional language dialog to your reply.

-Matt

On 7/3/2012 3:15 AM, Mariarita Arenella wrote:

Hi Matt,
thanks a lot, but my decimal separator is already ".", I changed it before installing TPP  ("English
(USA)") and it didn't work. What should I do? Have you any idea?..Please help me!!
Thanks,
Mària

2012/7/2 Matthew Chambers <matt.ch...@gmail.com <mailto:matt.chambers42@gmail.com>>

    Hi Maria and Goran,

    You can solve it yourself by changing your decimal separator to be '.' in regional/language
    settings. This is not an msconvert problem, it is a limitation of MSFileReader. Contact Thermo
    if you want to add your complaints to our own (we've tried to get it changed!). :)

    If your decimal separator is already '.' then that's a separate problem. Let me know.

    Thanks,
    -Matt



    On 6/30/2012 5:49 PM, Goran Mitulović wrote:

        Hello,
        I also have this problem. Any chance to be solved soon?

        Goran

[Matthew Chambers]

Try this latest version:
teamcity.labkey.org:8080/repository/download/bt36/60529:id/pwiz-setup-3.0.3768-x86.msi?guest=1

The error message will say what pwiz thinks your decimal/list separator is if it's not '.' or ','.

-Matt

On 7/4/2012 3:48 AM, Mariarita Arenella wrote:
> I tried to do that as first thing and it didn't work, then I changed the language in "English
> USA"...and it didn't work as well!!
> Mària
>

> 2012/7/3 Matthew Chambers <matt.ch...@gmail.com <mailto:matt.ch...@gmail.com>>

>
> That's puzzling. The "list separator" also has to be ";" but that's a separate error message. I
> wonder if your "." is actually some different unicode character? Please copy/paste it from the
> regional language dialog to your reply.
>
> -Matt
>
>
>
> On 7/3/2012 3:15 AM, Mariarita Arenella wrote:
>
> Hi Matt,
> thanks a lot, but my decimal separator is already ".", I changed it before installing TPP
> ("English
> (USA)") and it didn't work. What should I do? Have you any idea?..Please help me!!
> Thanks,
> Mària
>

> 2012/7/2 Matthew Chambers <matt.ch...@gmail.com <mailto:matt.ch...@gmail.com>
> <mailto:matt.chambers42@gmail.__com <mailto:matt.ch...@gmail.com>>>

[Mariarita Arenella]

i'm going to try!
thanks

2012/7/5 Matthew Chambers <matt.ch...@gmail.com>

Try this latest version:
teamcity.labkey.org:8080/repository/download/bt36/60529:id/pwiz-setup-3.0.3768-x86.msi?guest=1

The error message will say what pwiz thinks your decimal/list separator is if it's not '.' or ','.

-Matt

On 7/4/2012 3:48 AM, Mariarita Arenella wrote:

I tried to do that  as first thing and it didn't work, then I changed the language in "English
USA"...and it didn't work as well!!
Mària

2012/7/3 Matthew Chambers <matt.ch...@gmail.com <mailto:matt.chambers42@gmail.com>>

    That's puzzling. The "list separator" also has to be ";" but that's a separate error message. I
    wonder if your "." is actually some different unicode character? Please copy/paste it from the
    regional language dialog to your reply.

    -Matt



    On 7/3/2012 3:15 AM, Mariarita Arenella wrote:

        Hi Matt,
        thanks a lot, but my decimal separator is already ".", I changed it before installing TPP
          ("English
        (USA)") and it didn't work. What should I do? Have you any idea?..Please help me!!
        Thanks,
        Mària

        2012/7/2 Matthew Chambers <matt.ch...@gmail.com <mailto:matt.chambers42@gmail.com>

        <mailto:matt.chambers42@gmail.__com <mailto:matt.chambers42@gmail.com>>>

             Hi Maria and Goran,

             You can solve it yourself by changing your decimal separator to be '.' in regional/language
             settings. This is not an msconvert problem, it is a limitation of MSFileReader. Contact
        Thermo
             if you want to add your complaints to our own (we've tried to get it changed!). :)

             If your decimal separator is already '.' then that's a separate problem. Let me know.

             Thanks,
             -Matt



             On 6/30/2012 5:49 PM, Goran Mitulović wrote:

                 Hello,
                 I also have this problem. Any chance to be solved soon?

                 Goran

[Mariarita Arenella]

IT WORKS!!!!!!!!!!!!!!!!! Thank you very much!!!! I'm analyzing my data with PEP 3D!!! Matt in my PhD thesis you will be present in the acknowledgements!! Thanks again!!...ok now it's time to work...have a nice day.
Mariarita

2012/7/5 Mariarita Arenella <mariarita...@gmail.com>

[Mariarita Arenella]

Hi Rasmus,

I don't know why the link doesn't work anymore..the software name is MSconvert, but you can download any software that converts from raw to mzXML.
I hope this can help you, let me know
Mariarita

2012/10/4 Rasmus Kirkegaard <r4smuski...@gmail.com>

Hi Mariarita

I am experiencing the same problem... and I was happy to read through  and find that the solution works. But the link know has a 404..

Can you please post an answer to the solution?

Thanks in advance.

Best regards

Rasmus

Den fredag den 6. juli 2012 17.39.36 UTC+8 skrev Mariarita:

IT WORKS!!!!!!!!!!!!!!!!! Thank you very much!!!! I'm analyzing my data with PEP 3D!!! Matt in my PhD thesis you will be present in the acknowledgements!! Thanks again!!...ok now it's time to work...have a nice day.
Mariarita

2012/7/5 Mariarita Arenella <mariarita...@gmail.com>

i'm going to try!
thanks

2012/7/5 Matthew Chambers <matt.ch...@gmail.com>

Try this latest version:
teamcity.labkey.org:8080/repository/download/bt36/60529:id/pwiz-setup-3.0.3768-x86.msi?guest=1

The error message will say what pwiz thinks your decimal/list separator is if it's not '.' or ','.

-Matt

On 7/4/2012 3:48 AM, Mariarita Arenella wrote:

I tried to do that  as first thing and it didn't work, then I changed the language in "English
USA"...and it didn't work as well!!
Mària

2012/7/3 Matthew Chambers <matt.ch...@gmail.com <mailto:matt.ch...@gmail.com>>

    That's puzzling. The "list separator" also has to be ";" but that's a separate error message. I
    wonder if your "." is actually some different unicode character? Please copy/paste it from the
    regional language dialog to your reply.

    -Matt



    On 7/3/2012 3:15 AM, Mariarita Arenella wrote:

        Hi Matt,
        thanks a lot, but my decimal separator is already ".", I changed it before installing TPP
          ("English
        (USA)") and it didn't work. What should I do? Have you any idea?..Please help me!!
        Thanks,
        Mària

        2012/7/2 Matthew Chambers <matt.ch...@gmail.com <mailto:matt.ch...@gmail.com>

        <mailto:matt.ch...@gmail.__com <mailto:matt.ch...@gmail.com>>>

             Hi Maria and Goran,

             You can solve it yourself by changing your decimal separator to be '.' in regional/language
             settings. This is not an msconvert problem, it is a limitation of MSFileReader. Contact
        Thermo
             if you want to add your complaints to our own (we've tried to get it changed!). :)

             If your decimal separator is already '.' then that's a separate problem. Let me know.

             Thanks,
             -Matt



             On 6/30/2012 5:49 PM, Goran Mitulović wrote:

                 Hello,
                 I also have this problem. Any chance to be solved soon?

                 Goran

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[Rasmus Kirkegaard]

Hi Mariarita

Thank you that works great.

Best regards

Rasmus