Query related to filtering PTMprophet results in TPP

[Mehar Un Nissa]

Hello Sir/Madam,

We used TPP and PTMprophet for PTM analysis.

PTM  taken (Phosphorylation- STY)

After comet followed by PTM prophet analysis this is how pepxml view is:

We are getting columns of probability and some other columns. 

PROBLEM: In the filtering options we are not getting option of peptideprophet probability and PTMprophet probabilities (although iprophet probability option is coming). 

Could you please help me solve this. 

Looking forward to hearing from you

Thanks and regards,

Mehar Un Nissa

Research Scholar,

Proteomics Lab.

Department of Biosciences and Bioengineering,

Indian Institute of Technology, Bombay-400076

[David Shteynberg]

Your current version of the TPP doesn't have this feature.   You will have to upgrade to a more recent release.   Try 5.2.0 and let us know if that works.

David

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