TPP 4.4.1 compile error on linux

[GATTACA]

Hello.

I'm trying to compile TPP (v 4.4.1) on a fresh install of Fedora 14
(64-bit).
I'm getting a compile error and don't know if it's a bug or a missing
library on Fedora. Can anyone take a look and help me out?

Thanks in advance for any and all help.

Here is the error:

g -Wno-deprecated -Wno-char-subscripts -c -O2 -o /home/apps/tpp/
src/trans_proteomic_pipeline.v441/src/../build/linux/
CometDiscrimValMixtureDistr.o Validation/DiscriminateFunction/Comet/
CometDiscrimValMixtureDistr.cxx

Validation/DiscriminateFunction/Comet/CometDiscrimValMixtureDistr.cxx:
In constructor
‘CometDiscrimValMixtureDistr::CometDiscrimValMixtureDistr(int, const
char*, const char*, Boolean, Boolean)’:
Validation/DiscriminateFunction/Comet/CometDiscrimValMixtureDistr.cxx:
33:102: error: cannot call constructor
‘CometDiscrimValMixtureDistr::CometDiscrimValMixtureDistr’ directly
Validation/DiscriminateFunction/Comet/CometDiscrimValMixtureDistr.cxx:
33:102: error: for a function-style cast, remove the redundant
‘::CometDiscrimValMixtureDistr’
make: *** [/home/apps/tpp/src/trans_proteomic_pipeline.v441/src/../
build/linux/CometDiscrimValMixtureDistr.o] Error 1

[GATTACA]

[Brian Pratt]

Looks like I dealt with that in trunk, back in December. The commit
message was "C++ standard (or at least, older, portable revs of the
standard) doesn't allow a ctor to call another variant of itself. But
we can use default parameter values instead to achieve the same
effect.".

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[GATTACA]

So I should try to compile the SVN version?

On Mar 17, 1:07 pm, Brian Pratt <brian.pr...@insilicos.com> wrote:
> Looks like I dealt with that in trunk, back in December.  The commit
> message was "C++ standard (or at least, older, portable revs of the
> standard) doesn't allow a ctor to call another variant of itself.  But
> we can use default parameter values instead to achieve the same
> effect.".
>

[Brian Pratt]

That's the simplest way, yes. Although it may have some other pointy
edges on it.

[GATTACA]

Ah well, I'll take my chances. :)

Thanks

On Mar 18, 10:55 am, Brian Pratt <brian.pr...@insilicos.com> wrote:
> That's the simplest way, yes.  Although it may have some other pointy
> edges on it.
>

[Joseph Slagel]

Damian,

Interesting find.  Apparently I fixed this on the 4.6.2 branch and it never made it into trunk. If you do an svn update you should get the change as I just merged it into the trunk and tested it out on Ubuntu 12.04.

-Joe

On Thu, May 9, 2013 at 8:59 PM, Jonathan Hilmer <jonatha...@gmail.com> wrote:

I believe I am seeing this same problem on an SVN checkout of trunk (4.6.2) with Ubuntu 12.04.2 LTS.

Validation/DiscriminateFunction/Comet/CometDiscrimValMixtureDistr.cxx: In constructor ‘CometDiscrimValMixtureDistr::CometDiscrimValMixtureDistr(int, const char*, const char*, Boolean, Boolean, Boolean, Boolean)’:
Validation/DiscriminateFunction/Comet/CometDiscrimValMixtureDistr.cxx:34:120: error: cannot call constructor ‘CometDiscrimValMixtureDistr::CometDiscrimValMixtureDistr’ directly [-fpermissive]
Validation/DiscriminateFunction/Comet/CometDiscrimValMixtureDistr.cxx:34:120: error:   for a function-style cast, remove the redundant ‘::CometDiscrimValMixtureDistr’ [-fpermissive]

I've been generally following this guide: http://tools.proteomecenter.org/wiki/index.php?title=TPP_4.5.2:_Installing_on_Ubuntu_10.04.3.

Any suggestions?

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[Joseph Slagel]

s/Damian/Jonathan/