t2D converter

[Amit Kumar Yadav]

Hi All,

Does anyone know of a .t2D to MzXML/PKL/DTA converter for t2D files
from ABI-MALDI TOF/TOF (4700/4800/5800)series MS instruments?
I know of one java utility from proteomecommons.org named
"ConvertPeakList.jnlp" but it seems to have many bugs. It doesnt
convert into PKL/DTA correctly but converts into txt files and mgf.

[Matthew Chambers]

If you have an install of GPS/Data Explorer, then PyMsXml (1st hit on
google) will convert for you. Otherwise, proteomecommons.org is the only
tool I know that will work.

-Matt

[Zhi Sun]

Hi Amit,

I have a script that run the ConvertPeakList through command line that
convert each t2d file into a mzXML file, get mslevel information from the
t2d file name, and then combine all the mzXML file into one big file. If you
want to have this, I can send it to you.

Zhi

-Matt

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[Amit Yadav]

Hi Zhi,

That would be so kind of you and of so much help. Please send it to me.And thanks a lot in advance.

--
Regards,

Amit Kumar Yadav

Senior Research Fellow (SRF-CSIR)
IGIB, New Delhi (India)

http://masswiz.igib.res.in

[richie...@gmail.com]

I am also looking to convert .t2d files into mzxml, can you send me the script as well.

[Bell]

I have one on this website: pepchem.org, under download. It is a T2D converter that works on OSX and Windows, it needs java installed though.

[Mehran Umerani]

Hey Zhi, 

Could you send me the script as well?