Neverending SEQUEST search

[gkayihan]

Hi,
I am trying to run a sequest search with and MZXML file we got from a
collaborator on TPP. It looks like after 10 hours of search, sequest
stops and the last out and dta file written in the folder is created
around that time. however, when i look at TPP it looks like it is
still running. it does not add anymore line to the output or write new
dta or out files but continues to say "command is running". I
basically log out and log on to go with the rest of the analysis .
However I am a bit worried if everything is fine and this is normal?
I would really appreciate your input
sincerely
Gogce

[Brian Pratt]

Sounds like the classic browser timeout issue:

 

http://groups.google.com/group/spctools-discuss/search?hl=en&group=spctools-discuss&q=browser+timeout&qt_g=Search+this+group

 

I think you're pretty much doing what has to be done.

 

Brian

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[gkayihan]

Thank you very much, I really appreciate your answer :)
g

On Dec 11, 12:27 pm, Brian Pratt <brian.pr...@insilicos.com> wrote:
> Sounds like the classic browser timeout issue:
>

> http://groups.google.com/group/spctools-discuss/search?hl=en&group=sp...

>
> I think you're pretty much doing what has to be done.
>
> Brian
>

> On Fri, Dec 11, 2009 at 7:14 AM, gkayihan <gochemo...@gmail.com> wrote:
> > Hi,
> > I am trying to run a sequest search with and MZXML file we got from a
> > collaborator on TPP. It  looks like after 10 hours of search, sequest
> > stops and the last out and dta file written in the folder is created
> > around that time. however, when i look at TPP it looks like it is
> > still running. it does not add anymore line to the output or write new
> > dta or out files but continues to say "command is running". I
> > basically log out and log on to go with the rest of the analysis .
> > However I am a bit worried if everything is fine and this is normal?
> > I would really appreciate your input
> > sincerely
> > Gogce
>
> > --
>
> > You received this message because you are subscribed to the Google Groups
> > "spctools-discuss" group.
> > To post to this group, send email to spctools...@googlegroups.com.
> > To unsubscribe from this group, send email to

> > spctools-discu...@googlegroups.com<spctools-discuss%2Bunsu...@googlegroups.com>
> > .