Upcoming Trans-Proteomic Pipeline (TPP) course

[Luis Mendoza]

Hi everyone, the next Trans-Proteomic Pipeline (TPP) course will be held next week.

More info below.

--Luis

Proteomics Informatics Course at ISB in Seattle, Washington: July 26 – 28, 2023

Course Objective:

The SPC is pleased to offer a three-day intensive course in the use of a suite of open-source software tools designed for the analysis, validation, storage and interpretation of data obtained from large-scale quantitative proteomics experiments using various labeling methods, multi-dimensional chromatography and tandem mass spectrometry.  Through daily lectures and tutorials, each course participant should become proficient in the use of the tools.

Prerequisites:

Prerequisite for participation in the course is a demonstrated understanding in the operation of tandem mass spectrometers, the basic structure and interpretation of peptide MS/MS spectra and proficiency in the use of computers.  A commitment to attend the entire course is also required.

Participants must provide their own (64-bit Windows) laptop, and have the TPP software pre-installed.

Registrations must be completed by July 24, 2023.

Location:

Institute for Systems Biology
401 Terry Ave North
Seattle, WA 98109

Dates:

Wednesday, July 26, 8:00 am through Friday, July 28, 5:00 pm.

Participants must commit to attending the entire course and bring their own laptop with the TPP software pre-installed.

Lodging, Meals and Transportation:

These expenses and arrangements are the responsibility of the participants.

Fees:

No fee for this three-day course

Register:

Please fill out the attached document and send directly to luis.m...@isbscience.org

Preliminary Schedule:

[Emma Whittington]

Thank you for offering this. Will there be an option to attend virtually? I am not based in the US so would find it impossible to attend on short notice. 

All the best, 

Emma 

[Manuela Piazzi]

Awesome! I would really like to attend to get an update and to refresh my TPP skills, but I'm not based in the US as well and I might only attend virtually....

Cheers,

Manuela

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Dr Manuela Piazzi, PhD
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[sudarshan kumar]

Dear Luis,

Thank you so much for the invitation. I am from India and have been using TPP intensively. I had basic training in the past at the ABsciex facility in Delhi. But now as I am in Oregon at Oregon state university Corvallis for a few days, I am excited to use this opportunity to attend this course in a physical presence. 

Please include me among the potential participants. 

Many students in our lab in India are eager to learn as well. If possible please  arrange some online tutorials also. 

Regards,'

Sudarshan

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-------------------------------------------------------------------
The real voyage of discovery consists not in seeking new lands but seeing with new eyes. — Marcel Proust

Dr. Sudarshan Kumar
(B.V.Sc.& A.H., M.V.Sc., PhD.)
Scientist
Animal Biotechnology Center
(Proteomics and Cell Biology Lab.)
National Dairy Research Institute Karnal, 132001
Haryana, India
Contact No 09254912456
URL www.ndri.res.in

Orcid Id: https://orcid.org/0000-0002-9816-4307

[Luis Mendoza]

Hello Emma, Manuela, and others interested in attending virtually,

We have decided to provide a remote option to attend the course via Zoom on a limited basis.  Please fill out and send me the registration form, and note in the comments that you would like this option.

Please do note the following:

• The course will be held 8am-430pm local Seattle time (with breaks throughout); please make sure that you can attend.
• You will need to install TPP and download data to a 64-bit Windows machine so that you can execute the tutorials.  This is typically quite straightforward, and we'll be happy to help you install before the course begins, but we'll be limited in that ability after that.
• We plan on having remote participants muted, but will be happy to take questions via chat.
• One-on-one assistance will not be possible, or very limited at best.

More information regarding course materials and links will be sent to those who successfully register by Monday afternoon.

Thank you for your continued support and interest in this course!

-- Luis

To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/CANfZA4EC%3DeAsgAGJ_H5bwGdfOsZgR4n-RPxeoF_6HVQW45A2gQ%40mail.gmail.com.

[Aparna Agarwal]

Dear  Luis, 

Please send the link of the registration form. 

Regards

To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/CACyS9bpF4pRq_PpaCbNcbPZcCfqTa0%3DT5FJ3hThSnxTXLsvKtA%40mail.gmail.com.

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डॉ अपर्णा अग्रवाल

खाद्य पोषण और प्रौद्योगिकी विभाग

लेडी इरविन कॉलेज

नई दिल्ली

Dr. Aparna Agarwal

Department of Food and Nutrition and Food Technology

Lady Irwin College

New Delhi

[Luis Mendoza]

Hello,

Please find the Word document attached to the original course announcement.  You can also find it on the archived google-groups chat:

https://groups.google.com/g/spctools-discuss/c/Hnkw6NKsrgA/m/mn7hfOhfCQAJ

Cheers,

--Luis

To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/CAKg6o8oRd9nqqVG_nWUAxmvGhcg42ZZZLc1Vancq8HeqB2LwPA%40mail.gmail.com.

[sudarshan kumar]

Dear Luis,

Can you please share the link to download the latest version of TPP which we will be using in the training. 

Best

Sud

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[Luis]

Hello Sud,

You can find some info and links to the download instructions and release notes at our official website:

http://www.tppms.org/

The latest TPP version is 6.3.2, released in May 2023;  please let us know if you have any issues installing it.

Thanks,

--Luis