Installing TPP 5.1.0 on RHEL 7 gives error

[Monica HPC]

Hi there!

I am trying to install the newer version of TPP 5.1.0 on RedHat Enterprise Linux 7 server and I am getting the following error and warning after running `make install`.

I have installed all the prerequite libraries mentioned in the BUILD_LINUX documentation:

libgd2
libpng
zlib
libbz2

WARNING:

TPP/5.1.0/TPP_5.1.0-src/build/linux-x86_64/include/boost/config/compiler/gcc.hpp:205:0: warning: "BOOST_NO_CXX11_SCOPED_ENUMS" redefined [enabled by default]

 #  define BOOST_NO_CXX11_SCOPED_ENUMS

 ^

ERROR:

TPP/5.1.0/TPP_5.1.0-src/src/Parsers/mzIMLTools/CProteinAmbiguityGroup.cpp:106:69: error: cannot pass objects of non-trivially-copyable type ‘std::string {aka class std::basic_string<char>}’ through ‘...’

   sprintf(dbid, "%s_%d", baseRef, proteinDetectionHypothesis->size());

Am I missing something or is it a bug in the code?

Please do let me know if there is any workaround to fix this issue.

Thanks,

Monica

[Michael Hoopmann]

Hi Monica,

Thanks for reporting the bug. I have a fix for the source tree, but sourceforge is having problems right now. You can add the fix manually, though, by going into CProteinAmbiguityGroup.cpp and changing:

 

sprintf(dbid, "%s_%d", baseRef, proteinDetectionHypothesis->size());

 

 

to

 

sprintf(dbid, "%s_%d", &baseRef[0], proteinDetectionHypothesis->size());

 

 

Cheers,

Mike

 

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[Monica HPC]

Hi Mike,

Thanks for your response. This error is gone after the sprintf change you suggested but I now get the following error and couple of warnings when I run `make install`.

Error:

TPP/5.1.0/TPP_5.1.0-src/src/Quantitation/XPress/XPressPeptideUpdateParser/XPressPeptideUpdateParserMain.cpp:47:16: fatal error: gd.h: No such file or directory

 #include "gd.h"

                ^

compilation terminated.

Warnings:

warning: "BOOST_NO_CXX11_SCOPED_ENUMS" redefined [enabled by default]

and 

TPP/5.1.0/TPP_5.1.0-src/src/Parsers/mzIMLTools/mzIMLDemo/PepXMLParser3.cpp:363:43: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]

         mod.massStd=calcMonoMass("E",false)-18.0105633;

Regards,

Monica

[Joshua Dunham]

I believe you need to have libgd2 (or libgd2-dev) installed. 

J