Hi I was wondering if there was a tutorial on how to use RT Train? I'm not sure what kind of files it needs as an input.
I tried inputting my peptideProphet results but keep getting the following error.
Performing neural net training of retention times...
Fitting model to 0 peptides .
Not enough good identifications to fit retention time model.
Reverting to SSRCalc 1.0 predictions.
WARNING: Not enough high probability IDs in run index
Any papers or tutorial would help.
Thank you,
Aarthie