run interact parser with semi-tryptic enzyme
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Andreas Quandt
Oct 28, 2009, 12:26:26 PM10/28/09
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dear list,
i would like to run the interactparser and the mascot2xml with semitryptic as enzyme.
unfortunately, i do not know how as the help of both programs does not contain this information.
it would be great if someone could tell me the exact enzyme name i have to specify.
many thanks in advance,
andreas
i would like to run the interactparser and the mascot2xml with semitryptic as enzyme.
unfortunately, i do not know how as the help of both programs does not contain this information.
it would be great if someone could tell me the exact enzyme name i have to specify.
many thanks in advance,
andreas
Jimmy Eng
Oct 28, 2009, 12:35:48 PM10/28/09
to spctools...@googlegroups.com
Andreas,
Running Mascot2XML without any arguments does supply the info you're
looking for:
-E<sample_enzyme>
Recognised <sample_enyzme> (semi-cleavage specification: semi<sample_enyzme>)
trypsin : cut(KR) nocuts(P) sense(C)
Semi-cleavage can be specified as semi<sample_enyzme>,
e.g. semitrypsin, semiargc
Running Mascot2XML without any arguments does supply the info you're
looking for:
-E<sample_enzyme>
Recognised <sample_enyzme> (semi-cleavage specification: semi<sample_enyzme>)
trypsin : cut(KR) nocuts(P) sense(C)
Semi-cleavage can be specified as semi<sample_enyzme>,
e.g. semitrypsin, semiargc
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