ProtyQuant for comparing TPP samples (.pepXML)

[Robert]

Hi, I just published a software for  post-processing TPP .pepXML files (validated by PeptideProphet). The GUI software has the following functions:

- Calculation of protein inference/ probability

- Quantification; kind of spectral counting, but using peptide probabilities

- Compilation of tables in simple CSV format, for direct comparison of protein presence/ quantity in the different samples.

Most functions are implemented in the graphical user interface (Windows installer, Python, Docker.) For the experts, the code repository (https://bitbucket.org/lababi/protyquant/) also contains some scripts ;-).

"ProtyQuant: Comparing label-free shotgun proteomics datasets using accumulated peptide probabilities"

https://doi.org/10.1016/j.jprot.2020.103985

Have fun, Robert

[Luis Mendoza]

This looks great!  Thank you. Robert!

--Luis

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