spctools-discuss

Upgrading to TPP 6.1.0 is definitely recommended, however, as there are many additional benefits to

Great, glad that it is now working for you! We will remove references to that deprecated parameter

Hi Will, excellent, thanks for posting the final tested solution! Eric From: spctools-discuss@

Hi. There could be a few reasons why would report a "Warning - no spectra searched" message

Hello Priti, You can specify non-enzymatic cleavage by setting the protein, cleavage site parameter

I'm not certain I understand your question. If you're looking for a template X!Tandem params

Hello, It seems that your issue may be caused by this parameter: ms_level = 2-3 # MS level to analyze

Hello， I'm trying to generate a spectral library using SpectraST, and all worked well except the

Hi Malcolm, Yes, those instructions for adding new accounts are still valid; I find it simplest to

Apologies, my notes are published at Installing Trans Proteomic Pipeline (TPP) on CentOS 7 tl;dr: do

Very nice, thank you! On Fri, Jun 10, 2022 at 4:18 PM Malcolm Cook <malcolm.cook@gmail.com>

Hi Luis, Yeah, I quickly got used to it but thought it worth pointing out. It only had me confused

Great! Thank you for keep and sharing your useful notes in this process. Let us know if you encounter

I agree with you re using -k. I only did it after make was terminating with an error in order to try

Hi David, Thank you for updating the code and sorry for my late reply. This solves the problem for

Hi Malcolm, thank you for the corrections, the page is now updated. Let me know if you find any other

While executing svn checkout http://svn.code.sf.net/p/sashimi/code/trunk/trans_proteomic_pipeline I

Hello everyone, The SPC software tools team will be leading an evening Workshop on Monday June 6th at

Dear Juergen, Thank you very much for pointing this out. We will be sure to have this patched for the

Hi Eric, Thank you for your suggestions! Best, Jingyi On Wed, Apr 6, 2022 at 8:00 PM 'Eric

Hi, the problem is that the version of msconvert that you are using does not know how to recognize

Great! Thank you. On Wed, Apr 6, 2022, 7:04 AM Shagun Gupta <sg2369@cornell.edu> wrote: Hi

Hello Max, There seems to be an issue with running this command via the UI (Petunia). Can you check

I am wondering why conversion to pepXML needs to restrict the search enzyme in any way, given that

Hi, I am trying to get a list of common modifications that are maintained in the SpectraST. Or on

Hello, I am trying to analyse my TMT-labelled MS data using Libra. I have already got the pep.xml

Dear Sir/Mam, I have been trying to analyze PTMs of some files in TPP through PTM prophet, using the

Hi Will, Thanks for posting your question. This is due to a timeout setting in the webserver.

Hi all! I am trying to find SpectraST manual. I am looking information (perhaps there is a tutorial

Dear Eric. Thank you very much for your fast and helpful answer, now we at least have a new apporach