TPP @ ASMS 2019 -- booth #118 + Tuesday Workshop

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Luis Mendoza

May 30, 2019, 4:17:34 PM5/30/19
Hello everyone,

Next week the TPP software tools team is hosting a booth (#118) at the ASMS Conference; we're listed as Institute for Systems Biology on the program.

Please feel free to drop by and say hello to me (Luis), David, Eric, and Michael, and bring your PeptideAtlas/TPP-related software and/or installation questions.  We also have information on the recent TPP 5.2 release, as well as on our next courses in Southampton UK (BSPR Annual Meeting), Seattle USA (Cascadia Symposium), and Adelaide Australia (HUPO Congress).  Or just come hang out between sessions.

We will also be conducting an evening Workshop at ASMS on Tuesday June 4th at 5:45pm in room A304.  We'll give a brief intro to the existing TPP tools and then encourage discussion about them and about future directions for the TPP.  Topic leads for discussion are: proteogenomics & PEFF applications, analyzing PTMs with PTMProphet, cross-linking analysis with Kojak 2.0, and deploying the TPP using Docker containers & cloud computing platforms. So please come and learn about TPP and be part of the discussion about its future.

Lastly, we will be presenting several posters:
  • Kojak 2.0: New features for the analysis of cross-linked proteins
    Michael Hoopmann
    MP 044
  • End-to-End Integration of Known Variants and Modifications from PEFF into the Trans-Proteomic Pipeline for Enriched MS/MS Sequence Determination
    Luis Mendoza
    MP 417

  • Computing Information Content of PTM Site Localization Assignments Using PTMProphet
    David Shteynberg
    WP 400

Other posters related to TPP:
  • Proteomics Standards Initiative (PSI) Universal Spectrum Identifier (USI)
    Eric Deutsch
    MP 439

  • Proteomics Standards Initiative Extended FASTA Format (PEFF)
    Pierre-Alain Binz
    MP 438

More information at:

Please let your coworkers or any other interested people know, too!

Also, please let us know if you have a poster or oral presentation of research that makes use of the TPP; we'll try to drop by and visit.

--Luis, David, Eric, and Michael
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