dnor...@gmail.com
Just starting to learn to build modules is SpaDES.
I tried following instructions here:
https://htmlpreview.github.io/?https://github.com/PredictiveEcology/wolfAlps/blob/master/wolfAlps.html
But
moduleName <- "wolfAlps"
downloadModule(moduleName, data = TRUE)
returns error: "Error in downloadModule(name, path, version, repo, data, quiet, quickCheck, :
Not Found (HTTP 404)."
How do I install the WolfAlps module?
Many thanks,
Darren
> sessionInfo()
R version 3.6.0 (2019-04-26)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 17134)
Matrix products: default
locale:
[1] LC_COLLATE=Portuguese_Brazil.1252 LC_CTYPE=Portuguese_Brazil.1252
[3] LC_MONETARY=Portuguese_Brazil.1252 LC_NUMERIC=C
[5] LC_TIME=Portuguese_Brazil.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] SpaDES.addins_0.1.2 SpaDES.tools_0.3.2 SpaDES.core_0.2.5 quickPlot_0.1.6
[5] reproducible_0.2.8 SpaDES_2.0.3
loaded via a namespace (and not attached):
[1] CircStats_0.2-6 fastdigest_0.6-3 bitops_1.0-6 fpCompare_0.2.2
[5] sf_0.7-4 flock_0.7 lubridate_1.7.4 bit64_0.9-7
[9] RColorBrewer_1.1-2 httr_1.4.0 tools_3.6.0 backports_1.1.4
[13] rgdal_1.4-4 R6_2.4.0 KernSmooth_2.23-15 rgeos_0.4-3
[17] DBI_1.0.0 lazyeval_0.2.2 colorspace_1.4-1 raster_2.9-5
[21] sp_1.3-1 tidyselect_0.2.5 gridExtra_2.3 fasterize_1.0.0
[25] curl_3.3 bit_1.1-14 compiler_3.6.0 git2r_0.26.1
[29] versions_0.3 influenceR_0.1.0 checkmate_1.9.3 scales_1.0.0
[33] classInt_0.3-3 readr_1.3.1 stringr_1.4.0 digest_0.6.19
[37] R.utils_2.9.0 pkgconfig_2.0.2 htmltools_0.3.6 DEoptim_2.2-4
[41] htmlwidgets_1.3 rlang_0.4.0 rstudioapi_0.10 RSQLite_2.1.1
[45] shiny_1.3.2 visNetwork_2.0.7 jsonlite_1.6 dplyr_0.8.2
[49] rgexf_0.15.3 R.oo_1.22.0 RCurl_1.95-4.12 magrittr_1.5
[53] Rcpp_1.0.1 munsell_0.5.0 viridis_0.5.1 R.methodsS3_1.7.1
[57] stringi_1.4.3 MASS_7.3-51.4 grid_3.6.0 blob_1.1.1
[61] promises_1.0.1 parallel_3.6.0 crayon_1.3.4 miniUI_0.1.1.1
[65] lattice_0.20-38 hms_0.4.2 pillar_1.4.2 tcltk_3.6.0
[69] igraph_1.2.4.1 boot_1.3-22 gdalUtils_2.0.1.14 ffbase_0.12.7
[73] codetools_0.2-16 fastmatch_1.1-0 XML_3.98-1.20 glue_1.3.1
[77] downloader_0.4 data.table_1.12.2 remotes_2.1.0 httpuv_1.5.1
[81] foreach_1.4.4 testthat_2.1.1 gtable_0.3.0 archivist_2.3.2
[85] purrr_0.3.2 tidyr_0.8.3 assertthat_0.2.1 ggplot2_3.2.0
[89] gridBase_0.4-7 mime_0.7 xtable_1.8-4 ff_2.2-14
[93] e1071_1.7-2 later_0.8.0 class_7.3-15 googledrive_0.1.3
[97] viridisLite_0.3.0 tibble_2.1.3 iterators_1.0.10 memoise_1.1.0
[101] units_0.6-3 Rook_1.1-1 DiagrammeR_1.0.1 brew_1.0-6
>
Alex Chubaty
dnor...@gmail.com
Now downloaded and extracted the module to my module folder.
But now have an error with the first simInit example.
Can someone check whether this is something general or is it me (I believe I have all paths correctly specified following the example etc).
"Error in dirname(names(modulesToSearch[isParent])) :
a character vector argument expected "
Code below,
Many thanks,
Darren
times <- list(start = 0, end = 14, timeunit = "year")
modules <- list("wolfAlps")
moduleDir <- "C:/Users/Darren/Documents/2018 Unifilis demography/analysis/cmartr/inst/spadesdn/modules"
paths <- list(
modulePath = moduleDir,
cachePath = file.path(moduleDir, "outputR", "cache"),
inputPath = file.path(moduleDir, "wolfAlps", "data"),
outputPath = file.path(moduleDir, "outputR")
)
inputs <- data.frame(file = c("wolves2008.asc", "packs2008.asc",
"CMR.asc", "HabitatSuitability.asc"))
# accept default parameters for now
wolfModuleStart <- simInit(times = times,
#params = list(wolfAlps = parameters),
modules = modules, inputs = inputs, paths = paths)
Error in dirname(names(modulesToSearch[isParent])) :
a character vector argument expected
