Error running Sonarqube scanner

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vinay premkumar

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May 15, 2017, 5:36:07 AM5/15/17
to SonarQube
Hi,

I am running SonarQube scanner and seeing the below error. Can you please let us know how to resolve this?

env JAVA_HOME=/usr/lib/jvm/jre-1.8.0 /home/jenkins/sonar-scanner/sonar-scanner-2.6.1/bin/sonar-scanner -e -Dsonar.login=xxx -Dsonar.password=xxxx -Dsonar.analysis.mode=preview
INFO:root:INFO: SonarQube Scanner 2.6.1
INFO:root:INFO: Java 1.8.0_51 Oracle Corporation (64-bit)
INFO:root:INFO: Linux 3.10.0-327.4.4.el7.x86_64 amd64
INFO:root:INFO: Error stacktraces are turned on.
INFO:root:INFO: User cache: /home/jenkins/.sonar/cache
INFO:root:INFO: Load global repositories
INFO:root:INFO: Load global repositories (done) | time=237ms
INFO:root:WARN: Property 'sonar.jdbc.url' is not supported any more. It will be ignored. There is no longer any DB connection to the SQ database.
INFO:root:WARN: Property 'sonar.jdbc.username' is not supported any more. It will be ignored. There is no longer any DB connection to the SQ database.
INFO:root:WARN: Property 'sonar.jdbc.password' is not supported any more. It will be ignored. There is no longer any DB connection to the SQ database.
INFO:root:INFO: User cache: /home/jenkins/.sonar/cache
INFO:root:INFO: Exclude plugins: devcockpit, buildstability, pdfreport, report, scmactivity, views, jira
INFO:root:ERROR: [main] ERROR IOException java.io.IOException: Input/output error while extending persistit: old length=0, new length=8,192
INFO:root:INFO: ------------------------------------------------------------------------
INFO:root:INFO: EXECUTION FAILURE
INFO:root:INFO: ------------------------------------------------------------------------
INFO:root:INFO: Total time: 2.525s
INFO:root:INFO: Final Memory: 7M/150M
INFO:root:INFO: ------------------------------------------------------------------------
INFO:root:ERROR: Error during SonarQube Scanner execution
INFO:root:java.lang.IllegalStateException: Fail to start caches
INFO:root:      at org.sonar.scanner.index.CachesManager.initPersistit(CachesManager.java:68)
INFO:root:      at org.sonar.scanner.index.CachesManager.<init>(CachesManager.java:47)
INFO:root:      at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
INFO:root:      at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
INFO:root:      at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
INFO:root:      at java.lang.reflect.Constructor.newInstance(Constructor.java:422)
INFO:root:      at org.picocontainer.injectors.AbstractInjector.newInstance(AbstractInjector.java:145)
INFO:root:      at org.picocontainer.injectors.ConstructorInjector$1.run(ConstructorInjector.java:342)
INFO:root:      at org.picocontainer.injectors.AbstractInjector$ThreadLocalCyclicDependencyGuard.observe(AbstractInjector.java:270)
INFO:root:      at org.picocontainer.injectors.ConstructorInjector.getComponentInstance(ConstructorInjector.java:364)
INFO:root:      at org.picocontainer.injectors.AbstractInjectionFactory$LifecycleAdapter.getComponentInstance(AbstractInjectionFactory.java:56)
INFO:root:      at org.picocontainer.behaviors.AbstractBehavior.getComponentInstance(AbstractBehavior.java:64)
INFO:root:      at org.picocontainer.behaviors.Stored.getComponentInstance(Stored.java:91)
INFO:root:      at org.picocontainer.DefaultPicoContainer.instantiateComponentAsIsStartable(DefaultPicoContainer.java:1034)
INFO:root:      at org.picocontainer.DefaultPicoContainer.addAdapterIfStartable(DefaultPicoContainer.java:1026)
INFO:root:      at org.picocontainer.DefaultPicoContainer.startAdapters(DefaultPicoContainer.java:1003)
INFO:root:      at org.picocontainer.DefaultPicoContainer.start(DefaultPicoContainer.java:767)
INFO:root:      at org.sonar.core.platform.ComponentContainer.startComponents(ComponentContainer.java:141)
INFO:root:      at org.sonar.batch.bootstrapper.Batch.start(Batch.java:102)
INFO:root:      at org.sonar.batch.bootstrapper.Batch.start(Batch.java:91)
INFO:root:      at org.sonarsource.scanner.api.internal.batch.BatchIsolatedLauncher.start(BatchIsolatedLauncher.java:52)
INFO:root:      at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
INFO:root:      at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
INFO:root:      at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
INFO:root:      at java.lang.reflect.Method.invoke(Method.java:497)
INFO:root:      at org.sonarsource.scanner.api.internal.IsolatedLauncherProxy.invoke(IsolatedLauncherProxy.java:60)
INFO:root:      at com.sun.proxy.$Proxy0.start(Unknown Source)
INFO:root:      at org.sonarsource.scanner.api.EmbeddedScanner.doStart(EmbeddedScanner.java:220)
INFO:root:      at org.sonarsource.scanner.api.EmbeddedScanner.start(EmbeddedScanner.java:156)
INFO:root:      at org.sonarsource.scanner.cli.Main.execute(Main.java:70)
INFO:root:      at org.sonarsource.scanner.cli.Main.main(Main.java:60)
INFO:root:Caused by: com.persistit.exception.PersistitIOException: java.io.IOException: Input/output error
INFO:root:      at com.persistit.VolumeStorageV2.resize(VolumeStorageV2.java:657)
INFO:root:      at com.persistit.VolumeStorageV2.truncate(VolumeStorageV2.java:363)
INFO:root:      at com.persistit.VolumeStorageV2.create(VolumeStorageV2.java:157)
INFO:root:      at com.persistit.Volume.open(Volume.java:495)
INFO:root:      at com.persistit.Persistit.initializeVolumes(Persistit.java:644)
INFO:root:      at com.persistit.Persistit.initialize(Persistit.java:443)
INFO:root:      at org.sonar.scanner.index.CachesManager.initPersistit(CachesManager.java:65)
INFO:root:      ... 30 more
INFO:root:Caused by: java.io.IOException: Input/output error
INFO:root:      at sun.nio.ch.FileDispatcherImpl.force0(Native Method)
INFO:root:      at sun.nio.ch.FileDispatcherImpl.force(FileDispatcherImpl.java:76)
INFO:root:      at sun.nio.ch.FileChannelImpl.force(FileChannelImpl.java:386)
INFO:root:      at com.persistit.MediatedFileChannel.force(MediatedFileChannel.java:160)
INFO:root:      at com.persistit.VolumeStorageV2.resize(VolumeStorageV2.java:647)
INFO:root:      ... 36 more
INFO:root:ERROR:
INFO:root:ERROR: Re-run SonarQube Scanner using the -X switch to enable full debug logging.
INFO:root:Command exited with nonzero return value: 1
INFO:root:Sonar scanner run failed
make: *** [sonarpostgate] Error 1

Regards,
Vinay

anand sudhan

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May 15, 2017, 11:42:41 AM5/15/17
to SonarQube
I would try to rerun the command with -X switch. This error comes up when you have some trouble at the filesystem level.
Try clearing the sonar-runner/scanner cache file also which can be found here : ~Sonar_RUNNER_HOME/.sonar/cache

HTH,
Anand

vinay premkumar

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May 16, 2017, 3:25:55 AM5/16/17
to SonarQube
Hi,

I did try the cleaning up the cache , but still see the same issue. I have also tried it on a couple of machines as well. O/P with -X enabled.

01:05:03 INFO:root:ERROR: Error during SonarQube Scanner execution
01:05:03 INFO:root:java.lang.IllegalStateException: Unable to load component class org.sonar.core.platform.PluginLoader
01:05:03 INFO:root:	at org.sonar.core.platform.ComponentContainer$ExtendedDefaultPicoContainer.getComponent(ComponentContainer.java:69)
01:05:03 INFO:root:	at org.picocontainer.DefaultPicoContainer.getComponent(DefaultPicoContainer.java:632)
01:05:03 INFO:root:	at org.picocontainer.parameters.BasicComponentParameter$1.resolveInstance(BasicComponentParameter.java:118)
01:05:03 INFO:root:	at org.picocontainer.parameters.ComponentParameter$1.resolveInstance(ComponentParameter.java:136)
01:05:03 INFO:root:	at org.picocontainer.injectors.SingleMemberInjector.getParameter(SingleMemberInjector.java:78)
01:05:03 INFO:root:	at org.picocontainer.injectors.ConstructorInjector$CtorAndAdapters.getParameterArguments(ConstructorInjector.java:309)
01:05:03 INFO:root:	at org.picocontainer.injectors.ConstructorInjector$1.run(ConstructorInjector.java:335)
01:05:03 INFO:root:	at org.picocontainer.injectors.AbstractInjector$ThreadLocalCyclicDependencyGuard.observe(AbstractInjector.java:270)
01:05:03 INFO:root:	at org.picocontainer.injectors.ConstructorInjector.getComponentInstance(ConstructorInjector.java:364)
01:05:03 INFO:root:	at org.picocontainer.injectors.AbstractInjectionFactory$LifecycleAdapter.getComponentInstance(AbstractInjectionFactory.java:56)
01:05:03 INFO:root:	at org.picocontainer.behaviors.AbstractBehavior.getComponentInstance(AbstractBehavior.java:64)
01:05:03 INFO:root:	at org.picocontainer.behaviors.Stored.getComponentInstance(Stored.java:91)
01:05:03 INFO:root:	at org.picocontainer.DefaultPicoContainer.instantiateComponentAsIsStartable(DefaultPicoContainer.java:1034)
01:05:03 INFO:root:	at org.picocontainer.DefaultPicoContainer.addAdapterIfStartable(DefaultPicoContainer.java:1026)
01:05:03 INFO:root:	at org.picocontainer.DefaultPicoContainer.startAdapters(DefaultPicoContainer.java:1003)
01:05:03 INFO:root:	at org.picocontainer.DefaultPicoContainer.start(DefaultPicoContainer.java:767)
01:05:03 INFO:root:	at org.sonar.core.platform.ComponentContainer.startComponents(ComponentContainer.java:141)
01:05:03 INFO:root:	at org.sonar.batch.bootstrapper.Batch.start(Batch.java:102)
01:05:03 INFO:root:	at org.sonar.batch.bootstrapper.Batch.start(Batch.java:91)
01:05:03 INFO:root:	at org.sonarsource.scanner.api.internal.batch.BatchIsolatedLauncher.start(BatchIsolatedLauncher.java:52)
01:05:03 INFO:root:	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
01:05:03 INFO:root:	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
01:05:03 INFO:root:	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
01:05:03 INFO:root:	at java.lang.reflect.Method.invoke(Method.java:497)
01:05:03 INFO:root:	at org.sonarsource.scanner.api.internal.IsolatedLauncherProxy.invoke(IsolatedLauncherProxy.java:60)
01:05:03 INFO:root:	at com.sun.proxy.$Proxy0.start(Unknown Source)
01:05:03 INFO:root:	at org.sonarsource.scanner.api.EmbeddedScanner.doStart(EmbeddedScanner.java:220)
01:05:03 INFO:root:	at org.sonarsource.scanner.api.EmbeddedScanner.start(EmbeddedScanner.java:156)
01:05:03 INFO:root:	at org.sonarsource.scanner.cli.Main.execute(Main.java:70)
01:05:03 INFO:root:	at org.sonarsource.scanner.cli.Main.main(Main.java:60)
01:05:03 INFO:root:Caused by: java.lang.IllegalStateException: Unable to load component class org.sonar.core.platform.PluginClassloaderFactory
01:05:03 INFO:root:	at org.sonar.core.platform.ComponentContainer$ExtendedDefaultPicoContainer.getComponent(ComponentContainer.java:69)
01:05:03 INFO:root:	at org.picocontainer.DefaultPicoContainer.getComponent(DefaultPicoContainer.java:632)
01:05:03 INFO:root:	at org.picocontainer.parameters.BasicComponentParameter$1.resolveInstance(BasicComponentParameter.java:118)
01:05:03 INFO:root:	at org.picocontainer.parameters.ComponentParameter$1.resolveInstance(ComponentParameter.java:136)
01:05:03 INFO:root:	at org.picocontainer.injectors.SingleMemberInjector.getParameter(SingleMemberInjector.java:78)
01:05:03 INFO:root:	at org.picocontainer.injectors.ConstructorInjector$CtorAndAdapters.getParameterArguments(ConstructorInjector.java:309)
01:05:03 INFO:root:	at org.picocontainer.injectors.ConstructorInjector$1.run(ConstructorInjector.java:335)
01:05:03 INFO:root:	at org.picocontainer.injectors.AbstractInjector$ThreadLocalCyclicDependencyGuard.observe(AbstractInjector.java:270)
01:05:03 INFO:root:	at org.picocontainer.injectors.ConstructorInjector.getComponentInstance(ConstructorInjector.java:364)
01:05:03 INFO:root:	at org.picocontainer.injectors.AbstractInjectionFactory$LifecycleAdapter.getComponentInstance(AbstractInjectionFactory.java:56)
01:05:03 INFO:root:	at org.picocontainer.behaviors.AbstractBehavior.getComponentInstance(AbstractBehavior.java:64)
01:05:03 INFO:root:	at org.picocontainer.behaviors.Stored.getComponentInstance(Stored.java:91)
01:05:03 INFO:root:	at org.picocontainer.DefaultPicoContainer.getInstance(DefaultPicoContainer.java:699)
01:05:03 INFO:root:	at org.picocontainer.DefaultPicoContainer.getComponent(DefaultPicoContainer.java:647)
01:05:03 INFO:root:	at org.sonar.core.platform.ComponentContainer$ExtendedDefaultPicoContainer.getComponent(ComponentContainer.java:67)
01:05:03 INFO:root:	... 29 more
01:05:03 INFO:root:Caused by: java.lang.IllegalStateException: Unable to load component interface org.sonar.api.utils.TempFolder
01:05:03 INFO:root:	at org.sonar.core.platform.ComponentContainer$ExtendedDefaultPicoContainer.getComponent(ComponentContainer.java:69)
01:05:03 INFO:root:	at org.picocontainer.DefaultPicoContainer.getComponent(DefaultPicoContainer.java:632)
01:05:03 INFO:root:	at org.picocontainer.parameters.BasicComponentParameter$1.resolveInstance(BasicComponentParameter.java:118)
01:05:03 INFO:root:	at org.picocontainer.parameters.ComponentParameter$1.resolveInstance(ComponentParameter.java:136)
01:05:03 INFO:root:	at org.picocontainer.injectors.SingleMemberInjector.getParameter(SingleMemberInjector.java:78)
01:05:03 INFO:root:	at org.picocontainer.injectors.ConstructorInjector$CtorAndAdapters.getParameterArguments(ConstructorInjector.java:309)
01:05:03 INFO:root:	at org.picocontainer.injectors.ConstructorInjector$1.run(ConstructorInjector.java:335)
01:05:03 INFO:root:	at org.picocontainer.injectors.AbstractInjector$ThreadLocalCyclicDependencyGuard.observe(AbstractInjector.java:270)
01:05:03 INFO:root:	at org.picocontainer.injectors.ConstructorInjector.getComponentInstance(ConstructorInjector.java:364)
01:05:03 INFO:root:	at org.picocontainer.injectors.AbstractInjectionFactory$LifecycleAdapter.getComponentInstance(AbstractInjectionFactory.java:56)
01:05:03 INFO:root:	at org.picocontainer.behaviors.AbstractBehavior.getComponentInstance(AbstractBehavior.java:64)
01:05:03 INFO:root:	at org.picocontainer.behaviors.Stored.getComponentInstance(Stored.java:91)
01:05:03 INFO:root:	at org.picocontainer.DefaultPicoContainer.getInstance(DefaultPicoContainer.java:699)
01:05:03 INFO:root:	at org.picocontainer.DefaultPicoContainer.getComponent(DefaultPicoContainer.java:647)
01:05:03 INFO:root:	at org.sonar.core.platform.ComponentContainer$ExtendedDefaultPicoContainer.getComponent(ComponentContainer.java:67)
01:05:03 INFO:root:	... 43 more
01:05:03 INFO:root:Caused by: java.lang.IllegalStateException: Failed to create temporary folder in /home/jenkins/.sonar
01:05:03 INFO:root:	at org.sonar.scanner.bootstrap.GlobalTempFolderProvider.createTempFolder(GlobalTempFolderProvider.java:91)
01:05:03 INFO:root:	at org.sonar.scanner.bootstrap.GlobalTempFolderProvider.provide(GlobalTempFolderProvider.java:75)
01:05:03 INFO:root:	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
01:05:03 INFO:root:	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
01:05:03 INFO:root:	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
01:05:03 INFO:root:	at java.lang.reflect.Method.invoke(Method.java:497)
01:05:03 INFO:root:	at org.picocontainer.injectors.MethodInjector.invokeMethod(MethodInjector.java:129)
01:05:03 INFO:root:	at org.picocontainer.injectors.MethodInjector.access$000(MethodInjector.java:39)
01:05:03 INFO:root:	at org.picocontainer.injectors.MethodInjector$2.run(MethodInjector.java:113)
01:05:03 INFO:root:	at org.picocontainer.injectors.AbstractInjector$ThreadLocalCyclicDependencyGuard.observe(AbstractInjector.java:270)
01:05:03 INFO:root:	at org.picocontainer.injectors.MethodInjector.decorateComponentInstance(MethodInjector.java:120)
01:05:03 INFO:root:	at org.picocontainer.injectors.CompositeInjector.decorateComponentInstance(CompositeInjector.java:58)
01:05:03 INFO:root:	at org.picocontainer.injectors.Reinjector.reinject(Reinjector.java:142)
01:05:03 INFO:root:	at org.picocontainer.injectors.ProviderAdapter.getComponentInstance(ProviderAdapter.java:96)
01:05:03 INFO:root:	at org.picocontainer.DefaultPicoContainer.getInstance(DefaultPicoContainer.java:699)
01:05:03 INFO:root:	at org.picocontainer.DefaultPicoContainer.getComponent(DefaultPicoContainer.java:647)
01:05:03 INFO:root:	at org.sonar.core.platform.ComponentContainer$ExtendedDefaultPicoContainer.getComponent(ComponentContainer.java:67)
01:05:03 INFO:root:	... 57 more
01:05:03 INFO:root:Caused by: java.nio.file.FileSystemException: /home/jenkins/.sonar/.sonartmp_1942573823041242712: Input/output error
01:05:03 INFO:root:	at sun.nio.fs.UnixException.translateToIOException(UnixException.java:91)
01:05:03 INFO:root:	at sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:102)
01:05:03 INFO:root:	at sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:107)
01:05:03 INFO:root:	at sun.nio.fs.UnixFileSystemProvider.createDirectory(UnixFileSystemProvider.java:384)
01:05:03 INFO:root:	at java.nio.file.Files.createDirectory(Files.java:674)
01:05:03 INFO:root:	at java.nio.file.TempFileHelper.create(TempFileHelper.java:136)
01:05:03 INFO:root:	at java.nio.file.TempFileHelper.createTempDirectory(TempFileHelper.java:173)
01:05:03 INFO:root:	at java.nio.file.Files.createTempDirectory(Files.java:950)
01:05:03 INFO:root:	at org.sonar.scanner.bootstrap.GlobalTempFolderProvider.createTempFolder(GlobalTempFolderProvider.java:89)

Regards,
Vinay

G. Ann Campbell

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May 16, 2017, 8:59:54 AM5/16/17
to SonarQube
Hi,

A few files are written out during analysis. Since the initial exception was about I/O, I would make sure the user running the job has permissions to create and write to files in the project directory.


Ann
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