terminated with signal 11

[zxf...@gmail.com]

Hi, there,
I am trying to run SMufin on my data, but kept getting this error, with no output from SMuFin:

SMuFin:62943 terminated with signal 11 at PC=3b39883c62 SP=2b47e21507d8. Backtrace:
/lib64/libc.so.6[0x3b39883c62]

I gave 100GB memory for my SMuFin jobs, and use this command:
mpirun --np 20 SMuFin --ref hg19.fa --normal_fastq_1 SMuFin_chr10_RD10_Normal_1.fastq.txt --normal_fastq_2 SMuFin_chr10_RD10_Normal_2.fastq.txt --tumor_fastq_1 SMuFin_chr10_RD10_Tumor_1.fastq.txt --tumor_fastq_2 SMuFin_chr10_RD10_Tumor_2.fastq.txt --patient_id SMuFin_chr10_RD10 --cpus_per_node 20

Would you please provide suggestion about what I should do to make this work?

thank you!

Snow

[montse]

Hello,

Can you provide more information about your data? Human whole genome sequencing? Which coverage? Moreover, can you tell how long is running SMuFin before it gives you an error?

And about technical part, what is the version of the compiler that are you using?

Thank you,