Problem during installation

[emelie....@scilifelab.se]

Hi,
I am trying to install your program.
I obatin this message:

make
gcc -c alphabet.c
gcc -c amino.c
amino.c:54:5: warning: assigning to 'char *' from 'const char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
p = seq[i];
^ ~~~~~~
1 warning generated.
gcc -c array8.c
gcc -c array.c
gcc -c direct.c
gcc -c genarray.c
In file included from genarray.c:9:
./util.h:4:8: error: expected parameter declarator
size_t strlcpy(char *dst, const char *src, size_t size);
^
/usr/include/secure/_string.h:105:44: note: expanded from macro 'strlcpy'
__builtin___strlcpy_chk (dest, src, len, __darwin_obsz (dest))
^
/usr/include/secure/_common.h:39:62: note: expanded from macro '__darwin_obsz'
#define __darwin_obsz(object) __builtin_object_size (object, _USE_FORTIFY_LEVEL > 1 ? 1 : 0)
^
/usr/include/secure/_common.h:30:32: note: expanded from macro '_USE_FORTIFY_LEVEL'
# define _USE_FORTIFY_LEVEL 2
^
In file included from genarray.c:9:
./util.h:4:8: error: expected ')'
/usr/include/secure/_string.h:105:44: note: expanded from macro 'strlcpy'
__builtin___strlcpy_chk (dest, src, len, __darwin_obsz (dest))
^
/usr/include/secure/_common.h:39:62: note: expanded from macro '__darwin_obsz'
#define __darwin_obsz(object) __builtin_object_size (object, _USE_FORTIFY_LEVEL > 1 ? 1 : 0)
^
/usr/include/secure/_common.h:30:32: note: expanded from macro '_USE_FORTIFY_LEVEL'
# define _USE_FORTIFY_LEVEL 2
^
./util.h:4:8: note: to match this '('
/usr/include/secure/_string.h:105:44: note: expanded from macro 'strlcpy'
__builtin___strlcpy_chk (dest, src, len, __darwin_obsz (dest))
^
/usr/include/secure/_common.h:39:53: note: expanded from macro '__darwin_obsz'
#define __darwin_obsz(object) __builtin_object_size (object, _USE_FORTIFY_LEVEL > 1 ? 1 : 0)
^
In file included from genarray.c:9:
./util.h:4:8: warning: type specifier missing, defaults to 'int' [-Wimplicit-int]
size_t strlcpy(char *dst, const char *src, size_t size);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/secure/_string.h:105:44: note: expanded from macro 'strlcpy'
__builtin___strlcpy_chk (dest, src, len, __darwin_obsz (dest))
^~~~~~~~~~~~~~~~~~~~
/usr/include/secure/_common.h:39:31: note: expanded from macro '__darwin_obsz'
#define __darwin_obsz(object) __builtin_object_size (object, _USE_FORTIFY_LEVEL > 1 ? 1 : 0)
^~~~~~~~~~~~~~~~~~~~~
In file included from genarray.c:9:
./util.h:4:8: error: conflicting types for '__builtin___strlcpy_chk'
/usr/include/secure/_string.h:105:3: note: expanded from macro 'strlcpy'
__builtin___strlcpy_chk (dest, src, len, __darwin_obsz (dest))
^
./util.h:4:8: note: '__builtin___strlcpy_chk' is a builtin with type 'unsigned long (char *, const char *, unsigned long, unsigned long)'
/usr/include/secure/_string.h:105:3: note: expanded from macro 'strlcpy'
__builtin___strlcpy_chk (dest, src, len, __darwin_obsz (dest))
^
In file included from genarray.c:9:
./util.h:5:8: error: expected parameter declarator
size_t strlcat(char *dst, const char *src, size_t size);
^
/usr/include/secure/_string.h:111:44: note: expanded from macro 'strlcat'
__builtin___strlcat_chk (dest, src, len, __darwin_obsz (dest))
^
/usr/include/secure/_common.h:39:62: note: expanded from macro '__darwin_obsz'
#define __darwin_obsz(object) __builtin_object_size (object, _USE_FORTIFY_LEVEL > 1 ? 1 : 0)
^
/usr/include/secure/_common.h:30:32: note: expanded from macro '_USE_FORTIFY_LEVEL'
# define _USE_FORTIFY_LEVEL 2
^
In file included from genarray.c:9:
./util.h:5:8: error: expected ')'
/usr/include/secure/_string.h:111:44: note: expanded from macro 'strlcat'
__builtin___strlcat_chk (dest, src, len, __darwin_obsz (dest))
^
/usr/include/secure/_common.h:39:62: note: expanded from macro '__darwin_obsz'
#define __darwin_obsz(object) __builtin_object_size (object, _USE_FORTIFY_LEVEL > 1 ? 1 : 0)
^
/usr/include/secure/_common.h:30:32: note: expanded from macro '_USE_FORTIFY_LEVEL'
# define _USE_FORTIFY_LEVEL 2
^
./util.h:5:8: note: to match this '('
/usr/include/secure/_string.h:111:44: note: expanded from macro 'strlcat'
__builtin___strlcat_chk (dest, src, len, __darwin_obsz (dest))
^
/usr/include/secure/_common.h:39:53: note: expanded from macro '__darwin_obsz'
#define __darwin_obsz(object) __builtin_object_size (object, _USE_FORTIFY_LEVEL > 1 ? 1 : 0)
^
In file included from genarray.c:9:
./util.h:5:8: warning: type specifier missing, defaults to 'int' [-Wimplicit-int]
size_t strlcat(char *dst, const char *src, size_t size);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/secure/_string.h:111:44: note: expanded from macro 'strlcat'
__builtin___strlcat_chk (dest, src, len, __darwin_obsz (dest))
^~~~~~~~~~~~~~~~~~~~
/usr/include/secure/_common.h:39:31: note: expanded from macro '__darwin_obsz'
#define __darwin_obsz(object) __builtin_object_size (object, _USE_FORTIFY_LEVEL > 1 ? 1 : 0)
^~~~~~~~~~~~~~~~~~~~~
In file included from genarray.c:9:
./util.h:5:8: error: conflicting types for '__builtin___strlcat_chk'
/usr/include/secure/_string.h:111:3: note: expanded from macro 'strlcat'
__builtin___strlcat_chk (dest, src, len, __darwin_obsz (dest))
^
./util.h:5:8: note: '__builtin___strlcat_chk' is a builtin with type 'unsigned long (char *, const char *, unsigned long, unsigned long)'
/usr/include/secure/_string.h:111:3: note: expanded from macro 'strlcat'
__builtin___strlcat_chk (dest, src, len, __darwin_obsz (dest))
^
2 warnings and 6 errors generated.
make: *** [genarray.o] Error 1

Do you know what the problem could be?

All the best,
Emelie

[Valentí Moncunill González]

Hi Emelie,

Could you tell me which version of gcc you have installed in your system?

Regards,
Valentí

[giaco...@gmail.com]

Hi,
I had the same problem. SOLVED updating GCC version to the last one.]

Thanks