May 2021 PacBio Covid publications

[mag...@gmail.com]

In no particular order.

1. NIAID paper using UMIs looking at the S gene region for minor species ("haplotypes") in cell culture and longitudinal patient samples.

Ko et al “High-Throughput, Single-Copy Sequencing Reveals SARS-CoV-2 Spike Variants Coincident with Mounting Humoral Immunity during Acute COVID-19.” PLoS Pathogens (2021)

 the paper was discussed in Twiv 748 (4 min – 30 min mark) https://www.youtube.com/watch?v=suCNoeClj30

2. Wong et al “Subgenomic RNAs as Molecular Indicators of Asymptomatic SARS-CoV-2 Infection.” bioRxiv. (2021)

https://www.biorxiv.org/content/10.1101/2021.02.06.430041v1

3. Starr et al "Deep Mutational Scanning of SARS-CoV-2 Receptor Binding Domain Reveals Constraints on Folding and ACE2 Binding.” Cell (2020)

https://www.cell.com/cell/fulltext/S0092-8674(20)31003-5

4. Gonzalez-Reiche et al  “Introductions and Early Spread of SARS-CoV-2 in the New York City Area.” Science (2020)

https://science.sciencemag.org/content/369/6501/297