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Public google group for discussing bioinformatics tools for analyzing SARS-CoV-2 data using PacBio
https://github.com/Magdoll/
CoSA
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mag...@gmail.com
6/22/21
Freed 1.2kb amplicon protocol BED file
Just FYI since some people didn't know where the primers were for the 1.2kb amplicon protocol
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Freed 1.2kb amplicon protocol BED file
Just FYI since some people didn't know where the primers were for the 1.2kb amplicon protocol
6/22/21
mag...@gmail.com
6/21/21
1.2kb amplicon SARS-CoV-2 PacBio data release
This dataset is generated by the Smith lab at U of Louisville https://www.ncbi.nlm.nih.gov/bioproject
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1.2kb amplicon SARS-CoV-2 PacBio data release
This dataset is generated by the Smith lab at U of Louisville https://www.ncbi.nlm.nih.gov/bioproject
6/21/21
mag...@gmail.com
6/8/21
PacBio blog post on NIH SARS-CoV-2 study using UMIs in individual over time
https://www.pacb.com/blog/nih-scientists-chart-sars-cov-2-evolution-within-an-individual-over-time/
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PacBio blog post on NIH SARS-CoV-2 study using UMIs in individual over time
https://www.pacb.com/blog/nih-scientists-chart-sars-cov-2-evolution-within-an-individual-over-time/
6/8/21
mag...@gmail.com
5/13/21
May 2021 PacBio Covid publications
In no particular order. 1. NIAID paper using UMIs looking at the S gene region for minor species (
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May 2021 PacBio Covid publications
In no particular order. 1. NIAID paper using UMIs looking at the S gene region for minor species (
5/13/21
tkerelska
3/10/21
SMRT Leiden 2021 – Young Investigator Virtual Conference - Register now
We are delighted to announce that the SMRT Leiden 2021 – Young Investigator Virtual Conference will
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SMRT Leiden 2021 – Young Investigator Virtual Conference - Register now
We are delighted to announce that the SMRT Leiden 2021 – Young Investigator Virtual Conference will
3/10/21
mag...@gmail.com
2/19/21
CoSA v7.3.0 update: Labcorp (1.2kb amplicon) protocol, variant calling, and VCFCons
Hi all, The 1.2kb amplicon SARS-CoV-2 protocol used by Labcorp is at: https://www.pacb.com/research-
unread,
CoSA v7.3.0 update: Labcorp (1.2kb amplicon) protocol, variant calling, and VCFCons
Hi all, The 1.2kb amplicon SARS-CoV-2 protocol used by Labcorp is at: https://www.pacb.com/research-
2/19/21
Elizabeth Tseng
5/16/20
CoSA v2.6.0 update: whitelisting valid primer pairs and demuxing by patient
CoSA now at v2.6.0 Added section on how to demux by patient https://github.com/Magdoll/CoSA/wiki/SARS
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CoSA v2.6.0 update: whitelisting valid primer pairs and demuxing by patient
CoSA now at v2.6.0 Added section on how to demux by patient https://github.com/Magdoll/CoSA/wiki/SARS
5/16/20
