[slurm-users] Performance with hybrid setup

[vicentesmith]

Hello,

I'm performing some tests (CPU-only systems) in order to compare MPI versus hybrid setup. The system is running OpenMPIv4.1.2 so that a job submission reads:

      mpirun -np 48 foo.exe

or

      export OMP_NUM_THREADS=8

      mpirun -np 6 foo.exe

In our system, the latter runs slightly faster (about 5 to 10%) but any performance gain/loss will depend on the system & app.

In the same system and for the same app, the first SLURM script reads:

      #!/bin/bash

      #SBATCH --job-name=***

      #SBATCH --output=*

      #SBATCH --ntasks=48

      mpirun foo.exe

This script runs fine. Then, and for the hybrid job, the script reads:

      #!/bin/bash

      #SBATCH --job-name=***hybrid

      #SBATCH --output=***

      #SBATCH --ntasks=6

      #SBATCH --cpus-per-task=8

      export OMP_NUM_THREADS=$SLURM_CPUS_PER_TASK

      mpirun foo.exe

However, this runs much slower and it seems to slow down even more as it moves forward. Something is obviously not clicking correctly for the latter case. My only explanation is that the threads are not forked out correctly (by this I mean that the 8 threads are not assigned to the cores sharing the same L3). OpenMPI is supposed to choose the path of least resistance but I was wondering if I might need to recompile OpenMPI with some extra flags or modify the SLURM script somehow.    

Thanks.

[Renfro, Michael]

Slurm supports a l3_cache_as_socket [1] parameter in recent releases. That would make an Epyc system, for example, appear to have many more sockets than physically exist, and that should help ensure threads in a single task share a cache.

You’d want to run slurmd -C on a node with that setting enabled to generate the new NodeName parameters, and replace the old entries in the overall slurm.conf with the updates values.

[1] https://slurm.schedmd.com/slurm.conf.html#OPT_l3cache_as_socket

On Mar 13, 2022, at 1:43 PM, vicentesmith <vicent...@protonmail.com> wrote:



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