slimprints error

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Niall Haslam

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Oct 14, 2012, 10:47:32 AM10/14/12
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http://bioware.ucd.ie/~compass/Datasets/slimprints/LD7d3x/LD7d3x.stdout

Modeller not installed
Q03768
slimsearch_dir:/home/compass/public_html/Databases/SLiMSearch2 does not exist please. Please fix path in ./settings/utilities.ini
dssp_dir:/home/compass/public_html/Databases/Structures/dssp does not exist please. Please fix path in ./settings/utilities.ini
pdb_dir:/home/compass/public_html/Databases/Structures/pdb does not exist please. Please fix path in ./settings/utilities.ini
phosphoSitePlus:/disk3/Databases/Modification/phosphoSite.tdt does not exist please. Please fix path in ./settings/utilities.ini
| Q03768 loaded | Alignment exists |
Running conservation
slimsearch_dir:/home/compass/public_html/Databases/SLiMSearch2 does not exist please. Please fix path in ./settings/utilities.ini
dssp_dir:/home/compass/public_html/Databases/Structures/dssp does not exist please. Please fix path in ./settings/utilities.ini
pdb_dir:/home/compass/public_html/Databases/Structures/pdb does not exist please. Please fix path in ./settings/utilities.ini
phosphoSitePlus:/disk3/Databases/Modification/phosphoSite.tdt does not exist please. Please fix path in ./settings/utilities.ini
slimsearch_dir:/home/compass/public_html/Databases/SLiMSearch2 does not exist please. Please fix path in ./settings/utilities.ini
dssp_dir:/home/compass/public_html/Databases/Structures/dssp does not exist please. Please fix path in ./settings/utilities.ini
pdb_dir:/home/compass/public_html/Databases/Structures/pdb does not exist please. Please fix path in ./settings/utilities.ini
phosphoSitePlus:/disk3/Databases/Modification/phosphoSite.tdt does not exist please. Please fix path in ./settings/utilities.ini
Problem (list index out of range) with  Q03768.orthaln.fas
list index out of range
[('/home/compass/public_html/slimsuite/tools/slimprints3.py', 319, '<module>', 'slimprintsHelper.createMotifs()'), ('/home/compass/public_html/slimsuite/tools/../libraries/ned_SLiMPrints.py', 302, 'createMotifs', '"anchor":sum([float(self.data["anchorScore"][x]) for x in orderedOffsets])/len(orderedOffsets),')]


Error in routine
<br>
Error Type       : <type 'exceptions.IndexError'>
Error Value      : list index out of range
File             : /home/compass/public_html/slimsuite/tools/../libraries/ned_SLiMPrints.py
Method           : createMotifs
Line             : 302
Error            : "anchor":sum([float(self.data["anchorScore"][x]) for x in orderedOffsets])/len(orderedOffsets),

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