Hi Carl,
I am not sure about SDRSharp, but SDR++ understands the same commands as rigctld.exe, so you should be able to control it from SkyRoof. If you cannot, this is probably just a configuration issue. However, I think you are taking a wrong course of action. Instead of running a second SDR program in parallel with SkyRoof, you should tell us what filters you need for your decoding, then I will see if I can add them in SkyRoof.