Problem with SetID file

[wided boukhalfa]

Hello,

I am currently working on gene-set analysis using the SKAT package. i tried to generate the setID file several times, but I always get the same error msg: Erreur dans Check_ID_Length(File.SetID): Error in SetID file!

The only solution that I got is to have one SNP per Gene, which will affect my analysis since the SNP-association analysis revealed a significant signal in more than one SNP in a Gene.

Can you please help me fix this problem?

Here is an example of the SetID that I used

"PRDM16 1:3426162          

CASZ1 1:10647844 1:10653964        
MFN2 1:12004078 1:12004874        
PADI4 1:17354648 1:17363724        
PINK1_PINK1-AS 1:20644665          
HSPG2 1:21878194          
PRDX1 1:45519056          
AKR1A1 1:45566639          
PCSK9 1:55056028          
PRKAA2 1:56704281          
PATJ 1:61771558 1:62084608 1:62116563 1:62117175      
SGIP1 1:66682325          
ADGRL2 1:81970395          
DDAH1 1:85351500          
ABCA4 1:94001992 1:94011280        
DPYD_DPYD-AS1 1:97306285  "

Thanks in advance for your help!