pip bundle in latest code

[julien]

Hi Chris, 

I noticed that the previously bundled pip utility is gone, e.g. 

julien@ubuntu:~/sire.app/bin$ ll

total 300

drwxrwxr-x 2 julien julien   4096 Aug 19 10:46 ./

drwxrwxr-x 8 julien julien   4096 Aug 13 14:20 ../

lrwxrwxrwx 1 julien julien      6 Aug 19 10:46 align -> python*

lrwxrwxrwx 1 julien julien      6 Aug 19 10:46 analyse_freenrg -> python*

lrwxrwxrwx 1 julien julien      6 Aug 19 10:46 analyse_reti -> python*

lrwxrwxrwx 1 julien julien      6 Aug 19 10:46 download_source -> python*

lrwxrwxrwx 1 julien julien      6 Aug 19 10:46 install_package -> python*

lrwxrwxrwx 1 julien julien      6 Aug 19 10:46 ligandswap -> python*

lrwxrwxrwx 1 julien julien      6 Aug 19 10:46 package_sire -> python*

-rwxr-xr-x 1 julien julien  41684 Aug 13 23:28 python*

lrwxrwxrwx 1 julien julien      6 Aug 19 10:46 quantomm -> python*

-rwxr-xr-x 1 julien julien 126888 Aug 13 14:20 sire*

-rwxr-xr-x 1 julien julien  29382 Aug 13 14:20 sire_multispeedtest*

-rwxr-xr-x 1 julien julien  42372 Aug 13 14:20 sire_sqrttest*

lrwxrwxrwx 1 julien julien      6 Aug 19 10:46 sire_test -> python*

-rwxr-xr-x 1 julien julien  46433 Aug 13 14:20 sire_testmulti*

lrwxrwxrwx 1 julien julien      6 Aug 19 10:46 somd -> python*

lrwxrwxrwx 1 julien julien      6 Aug 19 10:46 somd-freenrg -> python*

lrwxrwxrwx 1 julien julien      6 Aug 19 10:46 transform -> python*

lrwxrwxrwx 1 julien julien      6 Aug 19 10:46 waterswap -> python*

lrwxrwxrwx 1 julien julien      6 Aug 19 10:46 waterview -> python*

This means that it is no longer possible to install python add-ons , e.g. 

~/sire.app/bundled/bin/pip install ipython ?

Julien

[Christopher Woods]

Hi Julien,

Yes - pip should be installed and bundled but there is a bug with my
install scripts that means that sometimes pip doesn't get compiled and
installed. I think that this is because there is a dependency failure
on setuptools (which needs installing before pip). At the moment you
need to manually install pip by first manually installing setuptools.
The source files are included in python/bundled/setuptools.tar.gz and
python/bundled/pip.tar.gz.

This is an annoying bug, but has not yet been of sufficient priority
to take the time to fix (as I need to recompile everything from
scratch to trigger the bug...)

Cheers,

Christopher

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--
---------------------------------------------------------
Christopher Woods
Centre for Computational Chemistry
School of Chemistry
University of Bristol, BS8 1TS, UK
+44 (0) 7786 264562
http://chryswoods.com
http://uk.linkedin.com/in/chryswoods