Shortbred vs HumanN in order to analyse nitrogen bacteria metabolism

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Violetta Florova

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Apr 9, 2019, 5:43:18 PM4/9/19

to shortbred-users

Dear ALL,

I was wondering what is the main difference between ShortBRED and HumanN?

I have built the library of all proteins key annotated to the nitrogen metabolism in KEGG database.

And I have very nice clustering of Human Microbiome project data based on the location (i.e. the markers found in gut were very specific and across the different oral locations)

What would be interesting for me - does anyone analyze the body part specificity with HumanN?

Would it make any sense to use ShortBred for existing pathways (not antibiotic resistance that is obviously the great thing to analyse)

I attach my library, in case if someone would be interested to run their data using this info.

https://drive.google.com/drive/folders/1pCOlfjFCJDPr8zvqpG2zi-GiVtFydrMk?usp=sharing