I think is not about the data. I've just discovered how to check my javascript console, and the only error i can see is this one:
htmlwidgets.js:654 Uncaught Error: All fields must be arrayswindow.
HTMLWidgets.dataframeToD3 @ htmlwidgets.js:654
(anonymous function) @ leaflet.js:852
(anonymous function) @ leaflet.js:723
addLayers @ leaflet.js:734
methods.addPolygons @ leaflet.js:849
(anonymous function) @ leaflet.js:1638
_sendMessagesToHandlers @ shinyapp.js:409
(anonymous function) @ shinyapp.js:494
_sendMessagesToHandlers @ shinyapp.js:409
dispatchMessage @ shinyapp.js:393
c.onmessage @ shinyapp.js:91
Total data is about 10 Mb, but the app doesn't uses the whole data each interaction, just a little part.
Any idea about this error?