SG-NEx data release v0.5

[CHEN Ying]

Hi SG-NEx data users,

We are happy to announce that we are now releasing version 0.5.0. In this release,  we include 2 more cell lines (hESC H9 and HEYA8) in the core dataset, with 3 replicates sequenced using all cDNA, direct cDNA and direct RNA protocols, as well as matched short read Illumina samples. For Hct116, we now include three more cDNA runs sequenced using PCS110 and PCS111, two of which have more than 100 million reads sequencing depth. In addition to new sample inclusion, we also updated some of the fastq files on both ENA and AWS. For details on the new sample release and fastq file updates, please refer to the detailed release note here:  https://github.com/GoekeLab/sg-nex-data/tree/master

You may check out the new samples sequencing data on the AWS: http://sg-nex-data.s3-website-ap-southeast-1.amazonaws.com/ and visualize them directly with the updated genome browser link: http://genome.ucsc.edu/cgi-bin/hgTracks?db=grch38&hubUrl=https://sg-nex-data.s3.amazonaws.com/data/sequencing_data_ont/genome_browser_data/hub_track/hub-ONT-Grch38-complete-2024-01-19.txt

Thank you for your continued support and looking forward to any feedback!

We also welcome any contribution as tutorials or other forms!

Warmest regards,

Ying - on behalf of the SG-NEx team

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