Problem installing sfepy with Ananconda

[Alicia White]

Hi,

I am having trouble installing sfepy.  I am using a Windows 8 machine with Anaconda installed.  

When I try to install I get a series of messages which I have pasted below.  I think the problem is in the part that I have bolded but I am not sure how to correct that.  Any assistance you could provide would be much appreciated.

Thanks,

Alicia

Missing optional package "mayavi"; you may get run-time errors

running build_ext

running build_src

build_src

building library "sfepy_common" sources

building library "sfepy_terms" sources

building extension "sfepy.discrete.fem.extmods._fmfield" sources

building extension "sfepy.discrete.fem.extmods.mappings" sources

building extension "sfepy.discrete.fem.extmods.assemble" sources

building extension "sfepy.discrete.fem.extmods.bases" sources

building extension "sfepy.discrete.fem.extmods.cmesh" sources

building extension "sfepy.discrete.fem.extmods.lobatto_bases" sources

building extension "sfepy.discrete.fem.extmods._geommech" sources

building extension "sfepy.discrete.iga.extmods.igac" sources

building extension "sfepy.linalg.extmods.crcm" sources

building extension "sfepy.terms.extmods.terms" sources

building data_files sources

build_src: building npy-pkg config files

Looking for python27.dll

customize Mingw32CCompiler

customize Mingw32CCompiler using build_clib

Looking for python27.dll

customize Mingw32CCompiler

customize Mingw32CCompiler using build_ext

extending extension 'sfepy.discrete.fem.extmods._fmfield' defined_macros with [('__SDIR__', '\'"sfepy\\discrete\\fem\\ex

tmods"\''), ('SFEPY_PLATFORM', 1)]

extending extension 'sfepy.discrete.fem.extmods.mappings' defined_macros with [('__SDIR__', '\'"sfepy\\discrete\\fem\\ex

tmods"\''), ('SFEPY_PLATFORM', 1)]

extending extension 'sfepy.discrete.fem.extmods.bases' defined_macros with [('__SDIR__', '\'"sfepy\\discrete\\fem\\extmo

ds"\''), ('SFEPY_PLATFORM', 1)]

extending extension 'sfepy.discrete.fem.extmods.lobatto_bases' defined_macros with [('__SDIR__', '\'"sfepy\\discrete\\fe

m\\extmods"\''), ('SFEPY_PLATFORM', 1)]

extending extension 'sfepy.discrete.fem.extmods._geommech' defined_macros with [('__SDIR__', '\'"sfepy\\discrete\\fem\\e

xtmods"\''), ('SFEPY_PLATFORM', 1)]

extending extension 'sfepy.terms.extmods.terms' defined_macros with [('__SDIR__', '\'"sfepy\\terms\\extmods"\''), ('SFEP

Y_PLATFORM', 1), ('__SDIR__', '\'"sfepy\\discrete\\fem\\extmods"\'')]

building 'sfepy.discrete.fem.extmods._fmfield' extension

compiling C sources

C compiler: gcc -m64 -g -DNDEBUG -DMS_WIN64 -O2 -Wall -Wstrict-prototypes

compile options: '-D__SDIR__='"sfepy\discrete\fem\extmods"' -DSFEPY_PLATFORM=1 -D__SDIR__='"sfepy\discrete\fem\extmods"'

 -DSFEPY_PLATFORM=1 -D__MSVCRT_VERSION__=0x0900 -Isfepy\discrete\fem\extmods -IC:\Users\awhite40\AppData\Local\Continuum

\Anaconda\lib\site-packages\numpy\core\include -IC:\Users\awhite40\AppData\Local\Continuum\Anaconda\include -IC:\Users\a

white40\AppData\Local\Continuum\Anaconda\PC -c'

extra options: '-g -O2'

gcc -m64 -g -DNDEBUG -DMS_WIN64 -O2 -Wall -Wstrict-prototypes -D__SDIR__='"sfepy\discrete\fem\extmods"' -DSFEPY_PLATFORM

=1 -D__SDIR__='"sfepy\discrete\fem\extmods"' -DSFEPY_PLATFORM=1 -D__MSVCRT_VERSION__=0x0900 -Isfepy\discrete\fem\extmods

 -IC:\Users\awhite40\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include -IC:\Users\awhite40\AppData\L

ocal\Continuum\Anaconda\include -IC:\Users\awhite40\AppData\Local\Continuum\Anaconda\PC -c sfepy\discrete\fem\extmods\_f

mfield.c -o build\temp.win-amd64-2.7\Release\sfepy\discrete\fem\extmods\_fmfield.o -g -O2

Found executable C:\Users\awhite40\AppData\Local\Continuum\Anaconda\Scripts\gcc.bat

gcc -m64 -g -shared build\temp.win-amd64-2.7\Release\sfepy\discrete\fem\extmods\_fmfield.o -LC:\Users\awhite40\AppData\L

ocal\Continuum\Anaconda\libs -LC:\Users\awhite40\AppData\Local\Continuum\Anaconda\PCbuild\amd64 -Lbuild\temp.win-amd64-2

.7 -lsfepy_common -lpython27 -lmsvcr90 -o sfepy\discrete\fem\extmods\_fmfield.pyd

build\temp.win-amd64-2.7/libsfepy_common.a: could not read symbols: Archive has no index; run ranlib to add one

collect2.exe: error: ld returned 1 exit status

error: Command "gcc -m64 -g -shared build\temp.win-amd64-2.7\Release\sfepy\discrete\fem\extmods\_fmfield.o -LC:\Users\aw

hite40\AppData\Local\Continuum\Anaconda\libs -LC:\Users\awhite40\AppData\Local\Continuum\Anaconda\PCbuild\amd64 -Lbuild\

temp.win-amd64-2.7 -lsfepy_common -lpython27 -lmsvcr90 -o sfepy\discrete\fem\extmods\_fmfield.pyd" failed with exit stat

us 1

[Luboš Kejzlar]

Hi Alicia,

there is probably something wrong with 'sfepy_common.a' library (as you pointed out).

Unfortunately, I'm unable to reproduce your problem, so please could you

check you have:

1. latest version of SfePy sources

2. latest Anaconda

     - conda update conda

 - conda update anaconda

3. Then make clean build

     - python setup.py clean

     - python setup.py build_ext --inplace

Look for similar lines in your log messages and paste corresponding part here.

>>>

Looking for python27.dll

customize Mingw32CCompiler

customize Mingw32CCompiler using build_clib

building 'sfepy_common' library

compiling C sources

C compiler: gcc -m64 -g -DNDEBUG -DMS_WIN64 -O2 -Wall -Wstrict-prototypes

[...]

gcc -m64 -g -DNDEBUG -DMS_WIN64 -O2 -Wall -Wstrict-prototypes -D__SDIR__='"sfepy\discrete\fem\extmods"' -DSFEPY_PLATFORM=1 -D__MSVCRT_VERSION__=0x0900 -Isfepy\discrete\fem\extmods -IC:\Users\kejzlar\Anaconda\include -IC:\Users\kejzlar\Anaconda\lib\site-packages\numpy\core\include -c sfepy\discrete\fem\extmods\common_python.c -o build\temp.win-amd64-2.7\sfepy\discrete\fem\extmods\common_python.o -g -O2

ar: adding 4 object files to build\temp.win-amd64-2.7\libsfepy_common.a

Found executable C:\Users\kejzlar\Anaconda\Scripts\ar.bat

<<<

Hopefully we'll be able to figure out whats wrong...

Regards,

Lubos

[Alicia White]

Hi Lubos,

Thanks for your help.

I updated to the latest version of sfepy and anaconda.

It is no longer giving me an error and the end of the message but when I try to use it with another code I am still getting a message that it can't find sfepy.  Any suggestions?

here are a couple of excerpts that are similar to what you posted

   

building data_files sources

build_src: building npy-pkg config files

Looking for python27.dll

customize Mingw32CCompiler

customize Mingw32CCompiler using build_clib

building 'sfepy_common' library

compiling C sources

C compiler: gcc -m64 -g -DNDEBUG -DMS_WIN64 -O2 -Wall -Wstrict-prototypes

[...]

gcc -m64 -g -DNDEBUG -DMS_WIN64 -O2 -Wall -Wstrict-prototypes -D__SDIR__='"sfepy\discrete\fem\extmods"' -DSFEPY_PLATFORM

=1 -D__MSVCRT_VERSION__=0x0900 -Isfepy\discrete\fem\extmods -IC:\Users\awhite40\AppData\Local\Continuum\Anaconda\include

 -IC:\Users\awhite40\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include -c sfepy\discrete\fem\extmods

\geommech.c -o build\temp.win-amd64-2.7\sfepy\discrete\fem\extmods\geommech.o -g -O2

Found executable C:\Users\awhite40\AppData\Local\Continuum\Anaconda\Scripts\gcc.bat

gcc -m64 -g -DNDEBUG -DMS_WIN64 -O2 -Wall -Wstrict-prototypes -D__SDIR__='"sfepy\discrete\fem\extmods"' -DSFEPY_PLATFORM

=1 -D__MSVCRT_VERSION__=0x0900 -Isfepy\discrete\fem\extmods -IC:\Users\awhite40\AppData\Local\Continuum\Anaconda\include

 -IC:\Users\awhite40\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include -c sfepy\discrete\fem\extmods

\refmaps.c -o build\temp.win-amd64-2.7\sfepy\discrete\fem\extmods\refmaps.o -g -O2

gcc -m64 -g -DNDEBUG -DMS_WIN64 -O2 -Wall -Wstrict-prototypes -D__SDIR__='"sfepy\discrete\fem\extmods"' -DSFEPY_PLATFORM

=1 -D__MSVCRT_VERSION__=0x0900 -Isfepy\discrete\fem\extmods -IC:\Users\awhite40\AppData\Local\Continuum\Anaconda\include

 -IC:\Users\awhite40\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include -c sfepy\discrete\fem\extmods

\fmfield.c -o build\temp.win-amd64-2.7\sfepy\discrete\fem\extmods\fmfield.o -g -O2

gcc -m64 -g -DNDEBUG -DMS_WIN64 -O2 -Wall -Wstrict-prototypes -D__SDIR__='"sfepy\discrete\fem\extmods"' -DSFEPY_PLATFORM

=1 -D__MSVCRT_VERSION__=0x0900 -Isfepy\discrete\fem\extmods -IC:\Users\awhite40\AppData\Local\Continuum\Anaconda\include

 -IC:\Users\awhite40\AppData\Local\Continuum\Anaconda\lib\site-packages\numpy\core\include -c sfepy\discrete\fem\extmods

\common_python.c -o build\temp.win-amd64-2.7\sfepy\discrete\fem\extmods\common_python.o -g -O2

ar: adding 4 object files to build\temp.win-amd64-2.7\libsfepy_common.a

Found executable C:\Users\awhite40\AppData\Local\Continuum\Anaconda\Scripts\ar.bat

building 'sfepy_terms' library

Thanks,

Alicia

[Robert Cimrman]

Hi Alicia,

On 01/23/2015 08:36 PM, Alicia White wrote:
>
> Hi Lubos,
> Thanks for your help.
> I updated to the latest version of sfepy and anaconda.
> It is no longer giving me an error and the end of the message but when I
> try to use it with another code I am still getting a message that it can't
> find sfepy. Any suggestions?

What do you mean by 'use it with another code' - is it importing sfepy modules?
Do you build sfepy in-place, or for a system-wide install? (Do not hesitate to
post the whole build output including the build command you used.)

r.

[Alicia White]

It is working now.  I think the anaconda update fixed the problem thanks!