installing sfepy.
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tone....@gmail.com
Jun 21, 2011, 1:33:25 PM6/21/11
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i'm finding sfepy to be very interesting, but installing it on windows
is very much tiresome. is there any way to make the installation one-
click???
thanks.
is very much tiresome. is there any way to make the installation one-
click???
thanks.
Robert Cimrman
Jun 22, 2011, 5:08:56 AM6/22/11
to sfepy...@googlegroups.com
There is not. It would be nice to have, but I do not use Windows at all, so I
have no clue how a windows installer can be implemented. Any windows
power-users around?
Anyway the long instructions [1] apply only if you want to use umfpack and
optimized blas/lapack underhood. If you want just to try the examples, all you
need is to install EPD [2] which has a GUI installer, and then run
python setup.py build_ext --inplace
in the directory where you have sfepy sources (unpacked release or a git clone).
Actually, I have found now, that the latest Python(x,y) already contains
pyparsing in additional plugins, so the same instructions apply here: install
Python(x,y) (all the plugins for simplicity), and the unpack sfepy and build it.
Does this help?
r.
[1]
http://docs.sfepy.org/doc-devel/introduction.html#running-on-windows-using-python-x-y
[2] http://www.enthought.com/products/epd.php
tone....@gmail.com
Jun 22, 2011, 12:48:03 PM6/22/11
to sfepy-devel
well, that's good news, i'll give it a try with new EBD and pythonxy
and will let you know.
so i think the installation tutorial needs to updated.
and will let you know.
so i think the installation tutorial needs to updated.
Robert Cimrman
Jun 23, 2011, 5:19:00 AM6/23/11
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It needs a review, yes.
Let us know how your installation went.
cheers,
r.
tone....@gmail.com
Jun 23, 2011, 4:50:18 PM6/23/11
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ok, with pythonxy, everything turns messy. so far no result except error.
with EBD, setup runs after removing the following red line from setup.py -
try:
setup(name = 'sfepy',
maintainer = "Robert Cimrman",
maintainer_email = "cimr...@ntc.zcu.cz",
description = DOCLINES[0],
long_description = "\n".join(DOCLINES[2:]),
url = "http://sfepy.org",
download_url = DOWNLOAD_URL,
license = 'BSD',
classifiers = filter(None, CLASSIFIERS.split('\n')),
platforms = ["Linux", "Mac OS-X", 'Windows'],
scripts = main_scripts,
cmdclass = cmdclass,
configuration = configuration)
on this line,setup terminates and declares bad descriptor error.
so far no successful result yet.
Robert Cimrman
Jun 24, 2011, 9:05:06 AM6/24/11
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I will try it on a windows machine when I get to one, and try to debug the
problems. Thanks for the reports!
I assume you tried the latest versions of both EPD and pythonxy, right?
r.
On Thu, 23 Jun 2011, tone....@gmail.com wrote:
> ok, with pythonxy, everything turns messy. so far no result�except�error.with EBD, setup runs after removing the following red line from setup.py -
> --
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tone....@gmail.com
Jun 24, 2011, 10:38:32 AM6/24/11
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yes, both the EBD and pythonxy were of latest release.
is it possible to run sfepy without installation?? then how?
tone....@gmail.com
Jun 24, 2011, 1:36:09 PM6/24/11
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i think the problem is- first, i need to compile the C extension modules to run sfepy on windows.
how do i do that?
Logan Sorenson
Jun 24, 2011, 2:47:52 PM6/24/11
to sfepy...@googlegroups.com
Hi,
I'm going to chime in here since I originally wrote the install guide
for Windows using pythonxy.
Have you installed msysgit? I recommended installing msysgit because
it gets you a minimal linux-like environment on windows. Also, it
includes the mingw32 C compiler.
Therefore, you should be able to run steps 1-6 from [1] (optionally
skipping 4 if the pyparsing package is now available in pythonxy) and
then skip to steps 16 and 17.
Notice on step 17 that we are passing the compiler option to the
setup.py command. You can potentially try other compilers, but I have
just used mingw32 from msysgit so far.
Hope that can get you started. Post back if you get results/stuck. :)
Logan
[1] http://docs.sfepy.org/doc-devel/introduction.html#running-on-windows-using-python-x-y
> --
> You received this message because you are subscribed to the Google Groups
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> To view this discussion on the web visit
> https://groups.google.com/d/msg/sfepy-devel/-/ZaLKRacXCjQJ.
tone....@gmail.com
Jun 24, 2011, 3:09:32 PM6/24/11
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ok! sfepy is running now, but its too slow.
runTests.py taking forever to complete, does it mean the umfpack scikit is not installed? python itself is computing here thats why its so slow?
Ondrej Certik
Jun 24, 2011, 7:22:01 PM6/24/11
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How long does it take to run just one test (just pick one)? So that we
can see how much slower it is.
Ondrej
osman
Jun 25, 2011, 12:35:10 PM6/25/11
to sfepy...@googlegroups.com
On Fri, 2011-06-24 at 14:47 -0400, Logan Sorenson wrote:
> Hi,
>
> I'm going to chime in here since I originally wrote the install guide
> for Windows using pythonxy.
>
> Have you installed msysgit? I recommended installing msysgit because
> it gets you a minimal linux-like environment on windows. Also, it
> includes the mingw32 C compiler.
>
> Therefore, you should be able to run steps 1-6 from [1] (optionally
> skipping 4 if the pyparsing package is now available in pythonxy) and
> then skip to steps 16 and 17.
>
> Notice on step 17 that we are passing the compiler option to the
> setup.py command. You can potentially try other compilers, but I have
> just used mingw32 from msysgit so far.
>
> Hope that can get you started. Post back if you get results/stuck. :)
>
> Logan
>
> [1] http://docs.sfepy.org/doc-devel/introduction.html#running-on-windows-using-python-x-y
>
> Hi,
>
> I'm going to chime in here since I originally wrote the install guide
> for Windows using pythonxy.
>
> Have you installed msysgit? I recommended installing msysgit because
> it gets you a minimal linux-like environment on windows. Also, it
> includes the mingw32 C compiler.
>
> Therefore, you should be able to run steps 1-6 from [1] (optionally
> skipping 4 if the pyparsing package is now available in pythonxy) and
> then skip to steps 16 and 17.
>
> Notice on step 17 that we are passing the compiler option to the
> setup.py command. You can potentially try other compilers, but I have
> just used mingw32 from msysgit so far.
>
> Hope that can get you started. Post back if you get results/stuck. :)
>
> Logan
>
> [1] http://docs.sfepy.org/doc-devel/introduction.html#running-on-windows-using-python-x-y
>
I have a windows7 partition. I followed your instructions to the letter.
It worked.
57 test files in 122 sec 2 failures/87 tests.
failed tests:
test_base_functions_delta
test_input (after acoustics.py)
I have not looked any further as I did not want to linger in windows7
any longer than necessary :-)
But looks like the failures are due to comparisons, otherwise there
should have been a lot more.
Thanks for the very detailed instructions.
Osman
tone....@gmail.com
Jun 26, 2011, 10:10:24 AM6/26/11
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hey osman,
can you tell me what have you used, EPD or pythonxy??
@ Ondrej- after passing 30 minutes or so, i just did a forced shut down.
osman
Jun 26, 2011, 10:11:31 PM6/26/11
to sfepy...@googlegroups.com
On Sun, 2011-06-26 at 07:10 -0700, tone....@gmail.com wrote:
> hey osman,
> can you tell me what have you used, EPD or pythonxy??
>
>
pyhonxy> hey osman,
> can you tell me what have you used, EPD or pythonxy??
>
>
osman
Jun 26, 2011, 10:15:25 PM6/26/11
to sfepy...@googlegroups.com
On Sun, 2011-06-26 at 07:10 -0700, tone....@gmail.com wrote:
Mine ran in 121 secs in win7 and 78 sec in linux. Win7 build does not
use blas+cholmod so it is naturally slower.
Robert Cimrman
Jun 27, 2011, 3:55:42 AM6/27/11
to sfepy...@googlegroups.com
Hi!
The slowness was reported to me before - without umfpack, some of the larger
tests hang indefinitely in the default solver, which is superlu bundled with scipy.
Osman, you did install umfpack, right?
Thanks to others for chiming in!
r.
tone....@gmail.com
Jun 27, 2011, 2:34:40 PM6/27/11
to sfepy...@googlegroups.com
ok, new results in.
today i ran sfepy with pythonxy, without umfpack.
test time 232 sec, 2 failed.
it seems there's some problem with EPD, but ok with pythonxy.
my pc is 1.8 Ghz core 2duo with 2Gb ddr2 ram.
tone....@gmail.com
Jun 27, 2011, 2:47:09 PM6/27/11
to sfepy...@googlegroups.com
correction with details:
<<< directory: tests, test files: 57
tests\test_assembling.py
Warning (from warnings module):
File "C:\sfepy-2011.2\sfepy\fem\extmods\geometry.py", line 178
return _geometry.VolumeGeometry_variable(self, *args)
DeprecationWarning: PyArray_FromDims: use PyArray_SimpleNew.
Warning (from warnings module):
File "C:\sfepy-2011.2\sfepy\fem\extmods\geometry.py", line 178
return _geometry.VolumeGeometry_variable(self, *args)
DeprecationWarning: PyArray_FromDimsAndDataAndDescr: use PyArray_NewFromDescr.
+++ test_dq_de: ok
+++ test_eval_matrix: ok
+++ test_save_ebc: ok
+++ test_surface_evaluate: ok
+++ test_vector_matrix: ok
tests\test_base.py
+++ test_struct_add: ok
+++ test_struct_i_add: ok
tests\test_domain.py
+++ test_facets: ok
+++ test_refine: ok
tests\test_elasticity_small_strain.py
+++ test_get_solution: ok
+++ test_linear_terms: ok
tests\test_fem.py
--- test_base_functions_delta: failed!
+++ test_base_functions_values: ok
tests\test_functions.py
+++ test_ebc_functions: ok
+++ test_material_functions: ok
+++ test_region_functions: ok
tests\test_high_level.py
+++ test_solving: ok
+++ test_term_arithmetics: ok
+++ test_term_evaluation: ok
+++ test_variables: ok
tests\test_input_acoustics.py
--- test_input: failed!
tests\test_input_active_fibres.py
+++ test_input: ok
tests\test_input_biot.py
+++ test_input: ok
tests\test_input_biot_npbc.py
Warning (from warnings module):
File "C:\sfepy-2011.2\sfepy\fem\extmods\geometry.py", line 260
return _geometry.SurfaceGeometry_variable(self, *args)
DeprecationWarning: PyArray_FromDims: use PyArray_SimpleNew.
Warning (from warnings module):
File "C:\sfepy-2011.2\sfepy\fem\extmods\geometry.py", line 260
return _geometry.SurfaceGeometry_variable(self, *args)
DeprecationWarning: PyArray_FromDimsAndDataAndDescr: use PyArray_NewFromDescr.
+++ test_input: ok
tests\test_input_biot_npbc_lagrange.py
+++ test_input: ok
tests\test_input_cube.py
+++ test_input: ok
tests\test_input_hyperelastic.py
+++ test_input: ok
tests\test_input_laplace_time_ebcs.py
+++ test_input: ok
tests\test_input_linear_elastic.py
+++ test_input: ok
tests\test_input_linear_elastic_dynamic.py
Warning (from warnings module):
File "C:\Python26\lib\site-packages\scipy\sparse\linalg\dsolve\linsolve.py", line 159
warn('splu requires CSC matrix format', SparseEfficiencyWarning)
SparseEfficiencyWarning: splu requires CSC matrix format
+++ test_input: ok
tests\test_input_linear_elastic_mM.py
+++ test_input: ok
tests\test_input_linear_elastic_tractions.py
+++ test_input: ok
tests\test_input_linear_elastic_up.py
+++ test_input: ok
tests\test_input_material_nonlinearity.py
+++ test_input: ok
tests\test_input_navier_stokes.py
+++ test_input: ok
tests\test_input_octahedron.py
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+++ test_input: ok
tests\test_input_perfusion_tl.py
+++ test_input: ok
tests\test_input_piezo.py
+++ test_ebc: ok
+++ test_input: ok
tests\test_input_poisson.py
+++ test_input: ok
tests\test_input_poisson_functions.py
+++ test_input: ok
tests\test_input_sinbc.py
+++ test_input: ok
tests\test_input_stabilized_navier_stokes.py
+++ test_input: ok
tests\test_input_stokes.py
+++ test_input: ok
tests\test_input_subdomains.py
+++ test_input: ok
tests\test_input_time_poisson.py
+++ test_input: ok
tests\test_io.py
+++ test_recursive_dict_hdf5: ok
+++ test_sparse_matrix_hdf5: ok
tests\test_laplace_unit_disk.py
+++ test_boundary_fluxes: ok
tests\test_laplace_unit_square.py
+++ test_boundary_fluxes: ok
+++ test_solution: ok
tests\test_lcbc_2d.py
+++ test_linear_rigid_body_bc: ok
tests\test_lcbc_3d.py
+++ test_linear_rigid_body_bc: ok
tests\test_linalg.py
+++ test_assemble1d: ok
+++ test_tensors: ok
+++ test_unique_rows: ok
tests\test_linear_solvers.py
+++ test_solvers: ok
tests\test_matcoefs.py
+++ test_tensors: ok
tests\test_mesh_interp.py
+++ test_interpolation: ok
+++ test_interpolation_two_meshes: ok
tests\test_meshio.py
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+++ test_read_meshes: ok
+++ test_compare_same_meshes: ok
+++ test_read_dimension: ok
+++ test_write_read_meshes: ok
tests\test_msm_laplace.py
+++ test_msm_laplace: ok
tests\test_msm_symbolic.py
+++ test_msm_symbolic_diffusion: ok
+++ test_msm_symbolic_laplace: ok
tests\test_parsing.py
+++ test_parse_equations: ok
+++ test_parse_regions: ok
tests\test_periodic_bc_2d.py
+++ test_pbc: ok
tests\test_periodic_bc_3d.py
+++ test_pbc: ok
tests\test_permutations.py
+++ test_rcm: ok
tests\test_projections.py
+++ test_mass_matrix: ok
+++ test_projection_tri_quad: ok
tests\test_quadratures.py
+++ test_quadratures: ok
+++ test_weight_consistency: ok
tests\test_regions.py
+++ test_operators: ok
+++ test_selectors: ok
tests\test_semismooth_newton.py
+++ test_semismooth_newton: ok
tests\test_sparse.py
+++ test_compose_sparse: ok
tests\test_tensors.py
+++ test_stress_transform: ok
+++ test_tensors: ok
+++ test_transform_data: ok
tests\test_term_consistency.py
+++ test_consistency_d_dw: ok
tests\test_units.py
+++ test_consistent_sets: ok
+++ test_units: ok
tests\test_volume.py
+++ test_volume: ok
57 test file(s) executed in 214.69 s, 2 failure(s) of 87 test(s)
osman
Jun 27, 2011, 10:06:46 PM6/27/11
to sfepy...@googlegroups.com
On Mon, 2011-06-27 at 09:55 +0200, Robert Cimrman wrote:
> Hi!
>
> The slowness was reported to me before - without umfpack, some of the larger
> tests hang indefinitely in the default solver, which is superlu bundled with scipy.
>
> Osman, you did install umfpack, right?
> Hi!
>
> The slowness was reported to me before - without umfpack, some of the larger
> tests hang indefinitely in the default solver, which is superlu bundled with scipy.
>
> Osman, you did install umfpack, right?
Yes I did.
Robert Cimrman
Jun 28, 2011, 3:17:35 AM6/28/11
to sfepy...@googlegroups.com
Good, so it seems you are getting the same errors as Dr. Geis... I have numpy
1.5.1 and he has 1.6.0, so maybe some rules in view/copy mechanism of arrays
changed a bit, causing those errors. I will look into it.
1.5.1 and he has 1.6.0, so maybe some rules in view/copy mechanism of arrays
changed a bit, causing those errors. I will look into it.
r.
PS: I am going to turn off that progress bar, as it obviously does not work
properly on windows, obscuring the whole output of runTests.py.
tone....@gmail.com
Jun 28, 2011, 1:36:34 PM6/28/11
to sfepy...@googlegroups.com
again with EPD, 1267 sec elapsed and many failures. i think the python version is a big factor. EPD uses 2.7 while pythonxy 2.6.
<<< directory: tests, test files: 57
tests\test_assembling.py
+++ test_dq_de: ok
+++ test_eval_matrix: ok
+++ test_save_ebc: ok
+++ test_surface_evaluate: ok
+++ test_vector_matrix: ok
tests\test_base.py
+++ test_struct_add: ok
+++ test_struct_i_add: ok
tests\test_domain.py
+++ test_facets: ok
+++ test_refine: ok
tests\test_elasticity_small_strain.py
--- test_get_solution: failed!
+++ test_linear_terms: ok
tests\test_fem.py
+++ test_base_functions_delta: ok
+++ test_base_functions_values: ok
tests\test_functions.py
+++ test_ebc_functions: ok
+++ test_material_functions: ok
+++ test_region_functions: ok
tests\test_high_level.py
--- test_solving: failed!
+++ test_term_arithmetics: ok
+++ test_term_evaluation: ok
+++ test_variables: ok
tests\test_input_acoustics.py
+++ test_input: ok
tests\test_input_active_fibres.py
--- test_input: failed!
tests\test_input_biot.py
--- test_input: failed!
tests\test_input_biot_npbc.py
--- test_input: failed!
tests\test_input_biot_npbc_lagrange.py
--- test_input: failed!
tests\test_input_cube.py
--- test_input: failed!
tests\test_input_hyperelastic.py
--- test_input: failed!
tests\test_input_laplace_time_ebcs.py
--- test_input: failed!
tests\test_input_linear_elastic.py
--- test_input: failed!
tests\test_input_linear_elastic_dynamic.py
Warning (from warnings module):
File "C:\Python27\lib\site-packages\scipy\sparse\linalg\dsolve\linsolve.py", line 159
warn('splu requires CSC matrix format', SparseEfficiencyWarning)
SparseEfficiencyWarning: splu requires CSC matrix format
--- test_input: failed!
tests\test_input_linear_elastic_mM.py
--- test_input: failed!
tests\test_input_linear_elastic_tractions.py
--- test_input: failed!
tests\test_input_linear_elastic_up.py
--- test_input: failed!
tests\test_input_material_nonlinearity.py
--- test_input: failed!
tests\test_input_navier_stokes.py
--- test_input: failed!
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--- test_input: failed!
tests\test_input_perfusion_tl.py
--- test_input: failed!
tests\test_input_piezo.py
+++ test_ebc: ok
--- test_input: failed!
tests\test_input_poisson.py
--- test_input: failed!
tests\test_input_poisson_functions.py
--- test_input: failed!
tests\test_input_sinbc.py
--- test_input: failed!
tests\test_input_stabilized_navier_stokes.py
--- test_input: failed!
tests\test_input_stokes.py
--- test_input: failed!
tests\test_input_subdomains.py
--- test_input: failed!
tests\test_input_time_poisson.py
--- test_input: failed!
tests\test_io.py
+++ test_recursive_dict_hdf5: ok
+++ test_sparse_matrix_hdf5: ok
tests\test_laplace_unit_disk.py
+++ test_boundary_fluxes: ok
tests\test_laplace_unit_square.py
--- test_boundary_fluxes: failed!
--- test_solution: failed!
tests\test_lcbc_2d.py
--- test_linear_rigid_body_bc: failed!
tests\test_lcbc_3d.py
--- test_linear_rigid_body_bc: failed!
tests\test_linalg.py
+++ test_assemble1d: ok
+++ test_tensors: ok
+++ test_unique_rows: ok
tests\test_linear_solvers.py
--- test_solvers: failed!
tests\test_matcoefs.py
+++ test_tensors: ok
tests\test_mesh_interp.py
+++ test_interpolation: ok
+++ test_interpolation_two_meshes: ok
tests\test_meshio.py
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--- test_msm_laplace: failed!
tests\test_msm_symbolic.py
--- test_msm_symbolic_diffusion: failed!
--- test_msm_symbolic_laplace: failed!
tests\test_parsing.py
+++ test_parse_equations: ok
+++ test_parse_regions: ok
tests\test_periodic_bc_2d.py
+++ test_pbc: ok
tests\test_periodic_bc_3d.py
+++ test_pbc: ok
tests\test_permutations.py
+++ test_rcm: ok
tests\test_projections.py
+++ test_mass_matrix: ok
--- test_projection_tri_quad: failed!
tests\test_quadratures.py
+++ test_quadratures: ok
+++ test_weight_consistency: ok
tests\test_regions.py
+++ test_operators: ok
+++ test_selectors: ok
tests\test_semismooth_newton.py
--- test_semismooth_newton: failed!
tests\test_sparse.py
+++ test_compose_sparse: ok
tests\test_tensors.py
+++ test_stress_transform: ok
+++ test_tensors: ok
+++ test_transform_data: ok
tests\test_term_consistency.py
+++ test_consistency_d_dw: ok
tests\test_units.py
+++ test_consistent_sets: ok
+++ test_units: ok
tests\test_volume.py
+++ test_volume: ok
57 test file(s) executed in 1267.58 s, 36 failure(s) of 87 test(s)
Robert Cimrman
Jun 29, 2011, 3:23:58 AM6/29/11
to sfepy...@googlegroups.com
Could you send me the output of 'runTests.py --debug' so that I can see where
the tests fail?
the tests fail?
Thanks!
r.
tone....@gmail.com
Jul 6, 2011, 4:10:17 PM7/6/11
to sfepy...@googlegroups.com
OS: MS Windows 7 Ultimate 32-bit
Processor: Intel Atom N570 1.66 GHz, Cores-2, Threads-4
RAM: 2.00 GB Single-Channel DDR2
i installed umfpack. and the result is -
>>>
<<< directory: tests, test files: 57
tests\test_assembling.py
Warning (from warnings module):
File "C:\src\sfepy-2011.2\sfepy\fem\extmods\geometry.py", line 178
return _geometry.VolumeGeometry_variable(self, *args)
DeprecationWarning: PyArray_FromDims: use PyArray_SimpleNew.
Warning (from warnings module):
File "C:\src\sfepy-2011.2\sfepy\fem\extmods\geometry.py", line 178
return _geometry.VolumeGeometry_variable(self, *args)
DeprecationWarning: PyArray_FromDimsAndDataAndDescr: use PyArray_NewFromDescr.
+++ test_dq_de: ok
+++ test_eval_matrix: ok
+++ test_save_ebc: ok
+++ test_surface_evaluate: ok
+++ test_vector_matrix: ok
tests\test_base.py
+++ test_struct_add: ok
+++ test_struct_i_add: ok
tests\test_domain.py
+++ test_facets: ok
+++ test_refine: ok
tests\test_elasticity_small_strain.py
+++ test_get_solution: ok
+++ test_linear_terms: ok
tests\test_fem.py
--- test_base_functions_delta: failed!
+++ test_base_functions_values: ok
tests\test_functions.py
+++ test_ebc_functions: ok
+++ test_material_functions: ok
+++ test_region_functions: ok
tests\test_high_level.py
+++ test_solving: ok
+++ test_term_arithmetics: ok
+++ test_term_evaluation: ok
+++ test_variables: ok
tests\test_input_acoustics.py
--- test_input: failed!
tests\test_input_active_fibres.py
+++ test_input: ok
tests\test_input_biot.py
+++ test_input: ok
tests\test_input_biot_npbc.py
Warning (from warnings module):
File "C:\src\sfepy-2011.2\sfepy\fem\extmods\geometry.py", line 260
return _geometry.SurfaceGeometry_variable(self, *args)
DeprecationWarning: PyArray_FromDims: use PyArray_SimpleNew.
Warning (from warnings module):
File "C:\src\sfepy-2011.2\sfepy\fem\extmods\geometry.py", line 260
return _geometry.SurfaceGeometry_variable(self, *args)
DeprecationWarning: PyArray_FromDimsAndDataAndDescr: use PyArray_NewFromDescr.
+++ test_input: ok
tests\test_input_biot_npbc_lagrange.py
+++ test_input: ok
tests\test_input_cube.py
+++ test_input: ok
tests\test_input_hyperelastic.py
+++ test_input: ok
tests\test_input_laplace_time_ebcs.py
+++ test_input: ok
tests\test_input_linear_elastic.py
+++ test_input: ok
tests\test_input_linear_elastic_dynamic.py
Warning (from warnings module):
File "C:\Python26\lib\site-packages\scipy\sparse\linalg\dsolve\linsolve.py", line 263
warn('splu requires CSC matrix format', SparseEfficiencyWarning)
SparseEfficiencyWarning: splu requires CSC matrix format
+++ test_input: ok
tests\test_input_linear_elastic_mM.py
+++ test_input: ok
tests\test_input_linear_elastic_tractions.py
+++ test_input: ok
tests\test_input_linear_elastic_up.py
+++ test_input: ok
tests\test_input_material_nonlinearity.py
+++ test_input: ok
tests\test_input_navier_stokes.py
+++ test_input: ok
tests\test_input_octahedron.py
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+++ test_input: ok
tests\test_input_perfusion_tl.py
+++ test_input: ok
tests\test_input_piezo.py
+++ test_ebc: ok
+++ test_input: ok
tests\test_input_poisson.py
+++ test_input: ok
tests\test_input_poisson_functions.py
+++ test_input: ok
tests\test_input_sinbc.py
+++ test_input: ok
tests\test_input_stabilized_navier_stokes.py
+++ test_input: ok
tests\test_input_stokes.py
+++ test_input: ok
tests\test_input_subdomains.py
+++ test_input: ok
tests\test_input_time_poisson.py
+++ test_input: ok
tests\test_io.py
+++ test_recursive_dict_hdf5: ok
+++ test_sparse_matrix_hdf5: ok
tests\test_laplace_unit_disk.py
+++ test_boundary_fluxes: ok
tests\test_laplace_unit_square.py
+++ test_boundary_fluxes: ok
+++ test_solution: ok
tests\test_lcbc_2d.py
+++ test_linear_rigid_body_bc: ok
tests\test_lcbc_3d.py
+++ test_linear_rigid_body_bc: ok
tests\test_linalg.py
+++ test_assemble1d: ok
+++ test_tensors: ok
+++ test_unique_rows: ok
tests\test_linear_solvers.py
+++ test_solvers: ok
tests\test_matcoefs.py
+++ test_tensors: ok
tests\test_mesh_interp.py
+++ test_interpolation: ok
+++ test_interpolation_two_meshes: ok
tests\test_meshio.py
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+++ test_read_meshes: ok
+++ test_compare_same_meshes: ok
+++ test_read_dimension: ok
+++ test_write_read_meshes: ok
tests\test_msm_laplace.py
+++ test_msm_laplace: ok
tests\test_msm_symbolic.py
+++ test_msm_symbolic_diffusion: ok
+++ test_msm_symbolic_laplace: ok
tests\test_parsing.py
+++ test_parse_equations: ok
+++ test_parse_regions: ok
tests\test_periodic_bc_2d.py
+++ test_pbc: ok
tests\test_periodic_bc_3d.py
+++ test_pbc: ok
tests\test_permutations.py
+++ test_rcm: ok
tests\test_projections.py
+++ test_mass_matrix: ok
+++ test_projection_tri_quad: ok
tests\test_quadratures.py
+++ test_quadratures: ok
+++ test_weight_consistency: ok
tests\test_regions.py
+++ test_operators: ok
+++ test_selectors: ok
tests\test_semismooth_newton.py
+++ test_semismooth_newton: ok
tests\test_sparse.py
+++ test_compose_sparse: ok
tests\test_tensors.py
+++ test_stress_transform: ok
+++ test_tensors: ok
+++ test_transform_data: ok
tests\test_term_consistency.py
+++ test_consistency_d_dw: ok
tests\test_units.py
+++ test_consistent_sets: ok
+++ test_units: ok
tests\test_volume.py
+++ test_volume: ok
57 test file(s) executed in 718.53 s, 2 failure(s) of 87 test(s)
>>>
tone....@gmail.com
Jul 6, 2011, 4:17:40 PM7/6/11
to sfepy...@googlegroups.com
without umfpack, it takes 950+ seconds, with umfpack it takes 700+ seconds.
how do i know that umfpack is working properly?? and why not we're using gotoblas2 along with umfpack????
Robert Cimrman
Jul 7, 2011, 7:08:45 AM7/7/11
to sfepy...@googlegroups.com
Good, the two failures are due to numpy 1.6.0 (already fixed in the git repo).
I just wonder about the time... It should take about 80 seconds on a reasonable
computer (like 2.5 GHz Intel/~1GB ram).
I just wonder about the time... It should take about 80 seconds on a reasonable
computer (like 2.5 GHz Intel/~1GB ram).
r.
Robert Cimrman
Jul 7, 2011, 7:14:59 AM7/7/11
to sfepy...@googlegroups.com
Yes, that could be the problem. I use ATLAS and have numpy, scipy, umfpack etc.
built against it. SfePy itself uses BLAS only through those packages, not directly.
I have heard that gotoblas is really good, but have no personal experience
with. ATLAS should be fine as well, just anything better then the reference
blas implementation numpy uses by default.
Can you post here the assmebling solution times of, for example:
./runTests.py tests/test_input_navier_stokes.py --debug
One iteration is enough, they should be similar. My times are:
sfepy: rezidual: 0.04 [s]
sfepy: solve: 0.72 [s]
sfepy: matrix: 0.36 [s]
r.
tone....@gmail.com
Jul 7, 2011, 8:48:32 AM7/7/11
to sfepy...@googlegroups.com
so, should i download the sfepy zip from code.google.com??
Robert Cimrman
Jul 7, 2011, 8:58:53 AM7/7/11
to sfepy...@googlegroups.com
On 07/07/11 14:48, tone....@gmail.com wrote:
> so, should i download the sfepy zip from code.google.com??
> so, should i download the sfepy zip from code.google.com??
The code.google.com version is the buggy one that you already have (2011.2).
The bleeding edge version can be obtained from github - follow the latest
snapshot link
* latest snapshot:
http://github.com/sfepy/sfepy/archives/master
and there choose either
"Download .tar.gz" or "Download .zip"
button under "Download Source"
The file should be named (after you save it) something like:
sfepy-sfepy-release_2011.2-41-g6494ce7.tar.gz
where the last part is coming from the last git commit hash.
r.
tone....@gmail.com
Jul 7, 2011, 9:09:20 AM7/7/11