gc_wiggle takes too much time

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Aug 17, 2023, 8:13:31 AM8/17/23

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Hello,

I've been running sequenza-utils gc_wiggle for GRCh37.p13.fasta file, and it's been 3 days.

I installed sequenza through pip install, and command line was sequenza-utils gc_wiggle -f GRCh37.p13.fa -o GRCh37.gc50Base.wig.gz -w 50.

And the size of output is 95M. Is it normal for it to take this long time? or am I doing something wrong?

Or is there some repository with wig files that came from reference fasta?

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May 13, 2024, 10:37:24 PM5/13/24

to Sequenza User Group

I'm having this issue as well - did you ever find a solution?

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