Sequenza User Group

Liên hệ với chủ sở hữu và người quản lý

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Welcome to Sequenza User Group!!
Feel free to ask questions and expose your problems/difficulties using sequenza.
Proposal and ideas are welcome as well.

Enjoy!!

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Ảnh tiểu sử của Jimin Hwang

Jimin Hwang, Minyi2

13 thg 5

gc_wiggle takes too much time

I'm having this issue as well - did you ever find a solution? On Thursday, August 17, 2023 at 8:

chưa đọc,

gc_wiggle takes too much time

I'm having this issue as well - did you ever find a solution? On Thursday, August 17, 2023 at 8:

13 thg 5

Ảnh tiểu sử của Donkiss Zidane

Donkiss Zidane4

11 thg 5

BUY DMT VAPE PEN IN PENNSYLVANIA USA

Buy Albino Penis Envy Mushrooms, or “APE,” is a genetically isolated, non-pigmented strain of the

chưa đọc,

BUY DMT VAPE PEN IN PENNSYLVANIA USA

Buy Albino Penis Envy Mushrooms, or “APE,” is a genetically isolated, non-pigmented strain of the

11 thg 5

Ảnh tiểu sử của Donkiss Zidane

Donkiss Zidane4

11 thg 5

WHERE TO BUY TOP QUALITY MOONROCKS ON TELEGRAM SAFELY

Buy Albino Penis Envy Mushrooms, or “APE,” is a genetically isolated, non-pigmented strain of the

chưa đọc,

WHERE TO BUY TOP QUALITY MOONROCKS ON TELEGRAM SAFELY

Buy Albino Penis Envy Mushrooms, or “APE,” is a genetically isolated, non-pigmented strain of the

11 thg 5

Ảnh tiểu sử của Heather Grant

1 thg 5

sequenza hg38 bins and blacklists

Dear group, I am a new user trying to use sequenza with hg38. I have had luck with the Sequenza_CNAqc

chưa đọc,

sequenza hg38 bins and blacklists

Dear group, I am a new user trying to use sequenza with hg38. I have had luck with the Sequenza_CNAqc

1 thg 5

Ảnh tiểu sử của Donkiss Zidane

Donkiss Zidane3

20 thg 4

WHERE TO BUY EXOTIC BUDS IN CHARLOTTE NC SAFELY

Buy Albino Penis Envy Mushrooms, or “APE,” is a genetically isolated, non-pigmented strain of the

chưa đọc,

WHERE TO BUY EXOTIC BUDS IN CHARLOTTE NC SAFELY

Buy Albino Penis Envy Mushrooms, or “APE,” is a genetically isolated, non-pigmented strain of the

20 thg 4

Ảnh tiểu sử của Parth Shah

10 thg 4

R sequenza package installation error

Hi all, I am not able to install the R sequenza package to R 3.2.1 on macOS. It throws the following

chưa đọc,

R sequenza package installation error

Hi all, I am not able to install the R sequenza package to R 3.2.1 on macOS. It throws the following

10 thg 4

Ảnh tiểu sử của Donkiss Zidane

Donkiss Zidane2

31 thg 3

WHERE TO ORDER FENTANYL PILLS IN OREGON USA

If you're interested in exploring the world of psychedelic mushrooms, you may be wondering if

chưa đọc,

WHERE TO ORDER FENTANYL PILLS IN OREGON USA

If you're interested in exploring the world of psychedelic mushrooms, you may be wondering if

31 thg 3

Ảnh tiểu sử của Donkiss Zidane

Donkiss Zidane2

31 thg 3

DMT POWDER FOR SALE ONLINE | WHERE TO PURCHASE WAX BADDER| WAX | SHATTER| LIVE RESIN FOR SALE ONLINE

If you're interested in exploring the world of psychedelic mushrooms, you may be wondering if

chưa đọc,

DMT POWDER FOR SALE ONLINE | WHERE TO PURCHASE WAX BADDER| WAX | SHATTER| LIVE RESIN FOR SALE ONLINE

If you're interested in exploring the world of psychedelic mushrooms, you may be wondering if

31 thg 3

Ảnh tiểu sử của Eric Blanc

Eric Blanc, … Donkiss Zidane5

31 thg 3

Error in gc.sample.stats

If you're interested in exploring the world of psychedelic mushrooms, you may be wondering if

chưa đọc,

Error in gc.sample.stats

If you're interested in exploring the world of psychedelic mushrooms, you may be wondering if

31 thg 3

Ảnh tiểu sử của mybabyfox fox

mybabyfox fox, … Donkiss Zidane3

30 thg 3

If you're interested in exploring the world of psychedelic mushrooms, you may be wondering if

chưa đọc,

If you're interested in exploring the world of psychedelic mushrooms, you may be wondering if

30 thg 3

Ảnh tiểu sử của PRAKHAR SONIK

PRAKHAR SONIK, … Donkiss Zidane10

30 thg 3

Empty seqz.gz output from bam2seqz

If you're interested in exploring the world of psychedelic mushrooms, you may be wondering if

chưa đọc,

Empty seqz.gz output from bam2seqz

If you're interested in exploring the world of psychedelic mushrooms, you may be wondering if

30 thg 3

Ảnh tiểu sử của Amit Goyal

Amit Goyal, … Donkiss Zidane12

24 thg 3

Error in seq.default(from = 1, to = CNt, by = 1) : 'to' cannot be NA, NaN or infinite

If you're interested in exploring the world of psychedelic mushrooms, you may be wondering if

chưa đọc,

Error in seq.default(from = 1, to = CNt, by = 1) : 'to' cannot be NA, NaN or infinite

If you're interested in exploring the world of psychedelic mushrooms, you may be wondering if

24 thg 3

Ảnh tiểu sử của Kwon Kujin

5 thg 3

Error in segmenting depth ratios

Hello, I'm trying to identify tumor purity from Strelka2 vcf output. Due to error issues in GC

chưa đọc,

Error in segmenting depth ratios

Hello, I'm trying to identify tumor purity from Strelka2 vcf output. Due to error issues in GC

5 thg 3

Ảnh tiểu sử của satishkumar Ranganathan Ganakammal

satishkumar Ranganathan Ganakammal, … Xiaoyan Luo5

24/12/23

Error while running sequenza

Hello, I am also trying to generated CNV and purity report for my data. Below is the command I am

chưa đọc,

Error while running sequenza

Hello, I am also trying to generated CNV and purity report for my data. Below is the command I am

24/12/23

Ảnh tiểu sử của satishkumar Ranganathan Ganakammal

satishkumar Ranganathan Ganakammal2

23/12/23

Inferring Tumor purity (High or low)

Hello, I am not able to find relationship between cellularity and tumor purity from paper or the

chưa đọc,

Inferring Tumor purity (High or low)

Hello, I am not able to find relationship between cellularity and tumor purity from paper or the

23/12/23

Ảnh tiểu sử của Sequenza User Group

Sequenza User Group

8/12/23

New sequenza version

Dear all, After loosing the copynumber package dependency (it was removed from BioC since

chưa đọc,

New sequenza version

Dear all, After loosing the copynumber package dependency (it was removed from BioC since

8/12/23

Ảnh tiểu sử của Hash_Vino

20/8/23

Depth ratio of 0.5 - noisy data

Hi, I've been running the standard Sequenza pipeline and it works pretty well. For some of the

chưa đọc,

Depth ratio of 0.5 - noisy data

Hi, I've been running the standard Sequenza pipeline and it works pretty well. For some of the

20/8/23

Ảnh tiểu sử của Emma

Emma, Francesco Favero2

9/8/23

Negative Bf values

Hi Emma, Apologise for replying to this post with such delay, Are you sure the normal sample is

chưa đọc,

Negative Bf values

Hi Emma, Apologise for replying to this post with such delay, Are you sure the normal sample is

9/8/23

Ảnh tiểu sử của kimdo_o

kimdo_o, Francesco Favero2

9/8/23

i don't know error UCSC hg38.fa reference

check for the sorting of the pileups, reference fa and gc file. They need to have the chromosome

chưa đọc,

i don't know error UCSC hg38.fa reference

check for the sorting of the pileups, reference fa and gc file. They need to have the chromosome

9/8/23

Ảnh tiểu sử của rkendar

rkendar, … Michael Knudsen4

4/8/23

Sequenza failed >100 GB RAM

Thanks for the details about what is causing the issue. I'm running Sequenza in a conda

chưa đọc,

Sequenza failed >100 GB RAM

Thanks for the details about what is causing the issue. I'm running Sequenza in a conda

4/8/23

Ảnh tiểu sử của zx yang

16/6/23

who hava sequenza v2.12 Rscript ，which in github is incomplete.

who hava sequenza v2.12 Rscript ，which in github is incomplete.

chưa đọc,

who hava sequenza v2.12 Rscript ，which in github is incomplete.

who hava sequenza v2.12 Rscript ，which in github is incomplete.

16/6/23

Ảnh tiểu sử của Ankur Chakravarthy

Ankur Chakravarthy

9/5/23

Error parsing and processing seqz outputs

Hi there, I've started to run into issues with a new batch of data that was identically processed

chưa đọc,

Error parsing and processing seqz outputs

Hi there, I've started to run into issues with a new batch of data that was identically processed

9/5/23

Ảnh tiểu sử của tan...@gmail.com

tan...@gmail.com

30/3/23

allele specific copy number

Dear all, I would appreciate having your help on the following : I would like to use a software that

chưa đọc,

allele specific copy number

Dear all, I would appreciate having your help on the following : I would like to use a software that

30/3/23

Ảnh tiểu sử của Giorgia Gandolfi

Giorgia Gandolfi

13/3/23

bam2seqz only processes one chromosome

Hi, I am using the command bam2seqz using mpileup format with -p parameter as follows: sequenza-utils

chưa đọc,

bam2seqz only processes one chromosome

Hi, I am using the command bam2seqz using mpileup format with -p parameter as follows: sequenza-utils

13/3/23

Ảnh tiểu sử của Xin Zheng

Xin Zheng, … supriya awasthi3

11/1/23

equenza.extract error

Hi all, I am also facing the same error after using seqzdata = sequenza.extract(data.file) Error:

chưa đọc,

equenza.extract error

Hi all, I am also facing the same error after using seqzdata = sequenza.extract(data.file) Error:

11/1/23

Ảnh tiểu sử của Sijian Xia

4/1/23

Have the copy number profiles from sequenza output been corrected by tumor purity and ploidy

Hello, Thanks for your excellent software. The problem I want to ask is "Have the copy number

chưa đọc,

Have the copy number profiles from sequenza output been corrected by tumor purity and ploidy

Hello, Thanks for your excellent software. The problem I want to ask is "Have the copy number

4/1/23

Ảnh tiểu sử của SAHAL PALADAN

9/12/22

Sir, Hope this email finds you well. I'm doing scar hrd analysis for my project. It requires .

chưa đọc,

Sir, Hope this email finds you well. I'm doing scar hrd analysis for my project. It requires .

9/12/22

Ảnh tiểu sử của Yun Peng

17/10/22

which column is Num_Probes in the segment file ?

Hello, I have read the manuscript - Sequenza: allele-specific copy number and mutation profiles from

chưa đọc,

which column is Num_Probes in the segment file ?

Hello, I have read the manuscript - Sequenza: allele-specific copy number and mutation profiles from

17/10/22

Ảnh tiểu sử của Shixiang Wang

Shixiang Wang, Francesco Favero4

23/8/22

gc_wiggle is quite slow, how should I speed up?

Thanks for the reply. It indeed strange. I tried python3.9 and python3.7 (in conda environment) on a

chưa đọc,

gc_wiggle is quite slow, how should I speed up?

Thanks for the reply. It indeed strange. I tried python3.9 and python3.7 (in conda environment) on a

23/8/22

Ảnh tiểu sử của Daniel Naro

28/4/21

Problem using Strelka preset

Hi, I find my self in the same situation as posted by another person in https://www.biostars.org/p/

chưa đọc,

Problem using Strelka preset

Hi, I find my self in the same situation as posted by another person in https://www.biostars.org/p/

28/4/21

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