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Welcome to Sequenza User Group!!
Feel free to ask questions and expose your problems/difficulties using sequenza.
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Sammy Prat
Dec 19
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Dec 19
Mihaela Martis
Dec 16
seqz_binning not reducing file size with high-coverage WGS data (>150x) + segmentation fault
Hello, I'm experiencing issues with sequenza-utils on high-coverage whole-genome sequencing data
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seqz_binning not reducing file size with high-coverage WGS data (>150x) + segmentation fault
Hello, I'm experiencing issues with sequenza-utils on high-coverage whole-genome sequencing data
Dec 16
Joan Line
Dec 9
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Dec 5
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Joan Line
Dec 4
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Dec 3
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Dec 3
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Dec 2
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Dec 1
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Amit Goyal
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Joan Line
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Nov 29
Q&A
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Davide Cittaro
,
Michael Knudsen
5
May 15
Memory error (paste exceeding 2^31-1 bytes)
I have had the same issue (it happens for noisy samples), and I've located the problem to this
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Memory error (paste exceeding 2^31-1 bytes)
I have had the same issue (it happens for noisy samples), and I've located the problem to this
May 15
virginia gazziero
May 13
Errors including r-sequenza in bioconda recipe
Hi, Thanks for the package! I am currently working at the development of a nf-core pipeline, and to
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Errors including r-sequenza in bioconda recipe
Hi, Thanks for the package! I am currently working at the development of a nf-core pipeline, and to
May 13
NILESH MUKHERJEE
,
Francesco Favero
2
Mar 19
Sequenza v4.0.0 Error/Issue Debugging help required
Hi Nilesh, I've messed up adding some optimization working only in my laptop, which uses clang to
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Sequenza v4.0.0 Error/Issue Debugging help required
Hi Nilesh, I've messed up adding some optimization working only in my laptop, which uses clang to
Mar 19
kmavromm
Feb 8
How to use sequenza to detect focal homozygous deletions
Hi, I am preparing to work on a project to call CNV events in a number of WES tumor -normal pairs.
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How to use sequenza to detect focal homozygous deletions
Hi, I am preparing to work on a project to call CNV events in a number of WES tumor -normal pairs.
Feb 8
Michael Knudsen
2
11/28/24
Corner case bug in sequenza.results?
Hi, Quick update on this issue. I have managed to get around it by adding seg.tab <- seg.tab[seg.
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Corner case bug in sequenza.results?
Hi, Quick update on this issue. I have managed to get around it by adding seg.tab <- seg.tab[seg.
11/28/24
Tusharika Rastogi
11/11/24
Sequenza.extract ERROR
Hello, I am trying to use the sequenza.extract function to process the seqz data. I produced the seqz
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Sequenza.extract ERROR
Hello, I am trying to use the sequenza.extract function to process the seqz data. I produced the seqz
11/11/24
Fenisha Shah
,
favero.f...@gmail.com
3
6/27/24
Installation error with the latest version of sequenza
Hello Francesco That seems to work! Thank you for your prompt response. I would like to highlight
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Installation error with the latest version of sequenza
Hello Francesco That seems to work! Thank you for your prompt response. I would like to highlight
6/27/24
Tanay
6/22/24
Sequenza ERROR: Collecting GC information Error in (function (x, col_types) : unused argument (parallel = 1)
Hi I am using Sequenza to identify CNAs in tumor-normal files . A year ago I was able to generate the
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Sequenza ERROR: Collecting GC information Error in (function (x, col_types) : unused argument (parallel = 1)
Hi I am using Sequenza to identify CNAs in tumor-normal files . A year ago I was able to generate the
6/22/24
Matt Bramble
6/14/24
Unable to install sequenza on any version of R.
install.packages('sequenza') will not work after multiple tries on various distros. Any ideas
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Unable to install sequenza on any version of R.
install.packages('sequenza') will not work after multiple tries on various distros. Any ideas
6/14/24
rkendar
, …
Michael Knudsen
6
6/12/24
Sequenza failed >100 GB RAM
Yup, it works fine. I'm running it in production without any issues. I'm using a conda
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Sequenza failed >100 GB RAM
Yup, it works fine. I'm running it in production without any issues. I'm using a conda
6/12/24
Xin Zheng
, …
satishkumar Ranganathan Ganakammal
4
5/30/24
equenza.extract error
Hello , Did any one solve this issue ? if so please provide any insights on the same Regards, Satish
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equenza.extract error
Hello , Did any one solve this issue ? if so please provide any insights on the same Regards, Satish
5/30/24
Giorgia Gandolfi
,
Davide Cittaro
2
5/29/24
bam2seqz only processes one chromosome
Do the two input file have the same chromosome order? I had similar issue recently and realized that
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bam2seqz only processes one chromosome
Do the two input file have the same chromosome order? I had similar issue recently and realized that
5/29/24
Michael Knudsen
5/29/24
Adjusted depth ratios before segmentation
Hi, Is it possible to make Sequenza output adjusted depth ratios at all SNP positions before
unread,
Adjusted depth ratios before segmentation
Hi, Is it possible to make Sequenza output adjusted depth ratios at all SNP positions before
5/29/24
Jimin Hwang
,
Minyi
2
5/13/24
gc_wiggle takes too much time
I'm having this issue as well - did you ever find a solution? On Thursday, August 17, 2023 at 8:
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gc_wiggle takes too much time
I'm having this issue as well - did you ever find a solution? On Thursday, August 17, 2023 at 8:
5/13/24