YBYRÁ facilitates comparison of large phylogenetic trees
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Denis Jacob Machado
Jun 30, 2015, 2:18:29 PM6/30/15
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Hi! How are you?
Check out my new program, YBYRÁ! It has just been published in BMC Bioinformatics (http://www.biomedcentral.com/1471-2105/16/204) and it is available in the webpage of our lab (http://www.ib.usp.br/grant/anfibios/researchSoftware.html).
Overview: The YBYRÁ project integrates software solutions for data analysis in phylogenetics. It comprises tools for (1) topological distance calculation based on the number of shared splits or clades, (2) sensitivity analysis and automatic generation of sensitivity plots (“Navajo rugs”) and (3) clade diagnoses based on different categories of synapomorphies (using TNT). YBYRÁ also provides (4) a framework to facilitate the search for potential rogue taxa based on how much they affect average matching split distances (using MSdist).
Citation: Machado D.J. 2015. YBYRÁ facilitates comparison of large phylogenetic trees. BMC Bioinformatics 16:204. doi:10.1186/s12859-015-0642-9
Overview: The YBYRÁ project integrates software solutions for data analysis in phylogenetics. It comprises tools for (1) topological distance calculation based on the number of shared splits or clades, (2) sensitivity analysis and automatic generation of sensitivity plots (“Navajo rugs”) and (3) clade diagnoses based on different categories of synapomorphies (using TNT). YBYRÁ also provides (4) a framework to facilitate the search for potential rogue taxa based on how much they affect average matching split distances (using MSdist).
Citation: Machado D.J. 2015. YBYRÁ facilitates comparison of large phylogenetic trees. BMC Bioinformatics 16:204. doi:10.1186/s12859-015-0642-9
Online manual: https://gitlab.com/MachadoDJ/ybyra/wikis/home
Hope you like it :) Please contact me in case you have any suggestions for the next version.
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