Sites úteis para anotação e predição

[Denis Jacob Machado]

Tandem repeats:
http://tandem.bu.edu/trf/trf.html

Gap closure:
http://bamics2.cmbi.ru.nl/websoftware/projector2/projector2_start.php
http://www.opgen.com/products-services/mapit-services

ORF finder:
http://www.ncbi.nlm.nih.gov/gorf/gorf.html

Gene finders:
https://ccb.jhu.edu/software/glimmer/
http://www.ncbi.nlm.nih.gov/genomes/MICROBES/glimmer_3.cgi
http://prodigal.ornl.gov/algorithm.html

Genome atlas:
http://www.cbs.dtu.dk/services/GenomeAtlas-3.0/?k=Bacteria&action=pt&pt=g&sf=length&sd=desc

Pathways:
http://www.genome.jp/kegg/pathway.html
http://biocyc.org/
http://www.brenda-enzymes.info/

Databases:
http://prosite.expasy.org/
http://pfam.sanger.ac.uk/
https://www.ebi.ac.uk/interpro/
http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi

Categorização de proteínas:
http://www.geneontology.org/
http://www.ncbi.nlm.nih.gov/COG/

Protein localization and structure:
http://www.psort.org/psortb/
http://www.cbs.dtu.dk/services/TMHMM-2.0/
http://www.cbs.dtu.dk/services/SignalP/
http://www.cbs.dtu.dk/services/LipoP/

Pipelines:
http://ae.igs.umaryland.edu/cgi/index.cgi
http://ae.igs.umaryland.edu/cgi/submit_sequence.cgi
https://www.sanger.ac.uk/resources/software/artemis/
http://www.sabia.lncc.br/login

Processo de anotação do NCBI:
http://www.ncbi.nlm.nih.gov/genome/annotation_prok/process/

Envio de sequências ao NCBI:
http://www.ncbi.nlm.nih.gov/guide/howto/submit-sequence-data/
https://submit.ncbi.nlm.nih.gov/subs/bioproject/
http://www.ncbi.nlm.nih.gov/Sequin/index.html
http://www.ncbi.nlm.nih.gov/projects/GenomeSubmit/genome_submit.cgi