Asking for solution

[YEO HWEY FERN]

Hello, can you solve my problem?
Error obtaining BLAST databases.
Tried: blastdbcmd -recursive -list /home -list_outfmt "%f    %t    %p    %n    %l    %d"
Error:
BLAST Database error: Input db vol does not match lmdb vol

Please could you report this to 'https://groups.google.com/forum/#!forum/sequenceserver'?

Since i used before is not comes out this problem...

[Devin Van]

One possible solution is to delete the current database, and regenerate a new one. 

[Anurag Priyam]

Hi there,

This error message is new, but I am guessing it has to do with the BLAST database format change.

Can you tell us what kind of databases you have in your database directory so we can get to the bottom of the problem? Are they downloaded from NCBI?

Also, when did this problem start happening? Did you update SequenceServer or BLAST after which you started seeing this error?

Priyam

PENAFIAN: E-mel ini dan apa-apa fail yang dikepilkan bersamanya ("Mesej") adalah ditujukan hanya untuk kegunaan penerima(-penerima) yang termaklum di atas dan mungkin mengandungi maklumat sulit. Anda dengan ini dimaklumkan bahawa mengambil apa jua tindakan bersandarkan kepada, membuat penilaian, mengulang hantar, menghebah, mengedar, mencetak, atau menyalin Mesej ini atau sebahagian daripadanya oleh sesiapa selain daripada penerima(-penerima) yang termaklum di atas adalah dilarang. Jika anda telah menerima Mesej ini kerana kesilapan, anda mesti menghapuskan Mesej ini dengan segera dan memaklumkan kepada penghantar Mesej ini menerusi balasan e-mel. Pendapat, rumusan, dan sebarang maklumat lain di dalam Mesej ini yang tidak berkait dengan urusan rasmi Universiti Kebangsaan Malaysia (UKM) adalah difahami sebagai bukan dikeluar atau diperakui oleh mana-mana pihak yang disebut.

DISCLAIMER : This e-mail and any files transmitted with it ("Message") is intended only for the use of the recipient(s) named above and may contain confidential information. You are hereby notified that the taking of any action in reliance upon, or any review, retransmission, dissemination, distribution, printing or copying of this Message or any part thereof by anyone other than the intended recipient(s) is strictly prohibited. If you have received this Message in error, you should delete this Message immediately and advise the sender by return e-mail. Opinions, conclusions and other information in this Message that do not relate to the official business of The National University of Malaysia (UKM) shall be understood as neither given nor endorsed by any of the aforementioned.

--
You received this message because you are subscribed to the Google Groups "sequenceserver" group.
To unsubscribe from this group and stop receiving emails from it, send an email to sequenceserve...@googlegroups.com.
To view this discussion on the web visit https://groups.google.com/d/msgid/sequenceserver/99aab3de-0a12-4666-a898-ef22c2ed5d9an%40googlegroups.com.

[YEO HWEY FERN .]

the problems have been solved. thank you so much

To view this discussion on the web visit https://groups.google.com/d/msgid/sequenceserver/35697A00-1D3F-47B5-A675-03F0792F5976%40gmail.com.

[Allan Kamau]

Hello Yeo,

There are several questions from Anurag Priyam but you answered none of them.

It would be prudent to let the community know what the problem was and how you solved the issue. This may help others who may face the same problem.

Allan.

To view this discussion on the web visit https://groups.google.com/d/msgid/sequenceserver/CAKDPdiSPG-ToLZsuJy5KPyQvuBjtKyA9jCEiH72DC0q5ykx9Kw%40mail.gmail.com.

[YEO HWEY FERN .]

Hello, 

I do not download from NCBI but the Uniprot and the database is protein. 

After I did (makeblastdb to that fasta sequence) but, I showed out that error. I realized that I did update BLAST version and also sequenceserver but not sure why comes out this problem.

After I login and logout my ubuntu20.04, the problem surprisingly solved 😊. Yea, I don't know how to explain about the exact solution.

Thank you so much.

best regards

On Wed, Feb 3, 2021 at 9:47 PM Anurag Priyam <anurag0...@gmail.com> wrote:

To view this discussion on the web visit https://groups.google.com/d/msgid/sequenceserver/35697A00-1D3F-47B5-A675-03F0792F5976%40gmail.com.

[Allan Kamau]

Thank you Yeo for sharing this information :-)

Allan.

To view this discussion on the web visit https://groups.google.com/d/msgid/sequenceserver/CAKDPdiSfmroLBMJhRSW%3DkZggmvsYTJnC7_7pSRgZKdfOrVbPDg%40mail.gmail.com.